Microarray Probes on PGSC0003DMT400018441
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17041_PI426222305 |
JHI_St_60k_v1 |
CAAGACAACTTGCCCACCTTCAAGAAAATTTGCTATTCTTTAGACTTGCTTGAGAATTAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400018441
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400018441 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G48930.1 |
+1 |
1e-61 |
209 |
148/448 (33%) |
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433 |
Transcript Sequence (1409 bp)
>PGSC0003DMT400018441 1409 pgsc_dm_v3.4
ATTCTCTCTATCTACTTATCCAAAATCAAAGAATTAGAGAAAACCATGAAGGTCAAAACA
GAAAGTTCAAAAATCATTAAGCCTTTCTATGAAGACAACATTATCCCTCCTTCTACTAGA
ACCTATATTCCCCTTAGTGTCTTTGATAAGGTCACTTATGAAGCCCAAATTGCAATCATC
TATGCCTATCGCCCTCCCACTCCACCAAACGCCGCGATTCAATTGGGGCTTCAAAAGGCC
CTAGCAATTTACAGGGAGTGGGCAGGGCGATTAGGTAAAGACGAACATGATAATCCAGTA
ATCTTGCTCAACGATGAGGGTGTTCGATTCGTTGAGGCATCTGCCGATAGCACTCTTGAT
AAAGTTATGCCCTTTAAGCCTTCGGCTTCTTTGCTTAACTTACATCCTAGCTTGAACAAT
GTGGTCGAGTTGGTGCAAGTTCAAGTCACGAGGTTTACTTGTGGCTCGTTGGTGGTCGGG
TTCACCGCCCACCATACTGTGGCTGATGGCCATTCCACTAGCAACTTTTTAGTTGCATGG
GGTCAAGCCTGTCGAGGGCTTGGCATTAATCCACTTCCTTTACATGATCGTACAATTTTC
AACCCTCGAAACCCTCCTCTCATCGAGTATGAGCATAAGGGGACCGAGTTTATGTCAAAA
TCTGTTAAAAAGGAAAATTCACTCAATGAAAGTACTCATCATGTAACGGAAGATATAGTG
GTGCACAAAGTCCATTTCACCGTTGAGTTTCTAGCAAAACTCAAGGCAAAAGCCTCTTCG
ATGAATAACAACAACCACAACAATAATAAACCTTATAGCACATTTGAGAGCCTTGTTGCA
CATTTATGGAGGGCCATCACTAAAGCGCGAGGCCTAAGTGGCTTCGAGACAACTCATATA
AGAATCTCAGTCAATGGTAGAATGAGGTTGAACCCCAGAGTACCTAATGAGTACTTTGGA
AACTTAGTACTTTGGGCATTTCCAACATCAAAAGTGAAGGATCTTCTAAGAGAGCCTCTT
CCTTATGCAACAAAGCTCATTCATGACGCGGTTGCAAAAGTAAACAACAACTATTTCAAA
TCGTTCATAGACTTTGCTAATCACAAAGAAGAAGATCTCATACCAACAGCAGACATGAGC
AAGCACATATTATGTCCTAATCTCGAAGTTGATAGTTGGTTAAGGTTTCCATTCTACGAC
TTAGATTTTGGAACGGGGTGTCCGTACATGTTCATGCCTTCATATTTCCCAACAGAAGGG
ATGATGTTTCTTCTACCATCATTCATTGGAGATGGAAGCATTGATGCTTTCATTCCATTG
TTTCAAGACAACTTGCCCACCTTCAAGAAAATTTGCTATTCTTTAGACTTGCTTGAGAAT
TAATTACTTCAATGATATTAATCCTAAAC
