Microarray Probes on PGSC0003DMT400018296
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17970_PI426222305 |
JHI_St_60k_v1 |
GATTTCATTTCCAGTAAAAATAAGTGGAGAAAATGAGTGGGTCCACAGCTATTATTTTCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400018296
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400018296 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G78850.1 |
+1 |
5e-84 |
266 |
142/282 (50%) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr1:29642072-29643397 REVERSE LENGTH=441 |
Transcript Sequence (1172 bp)
>PGSC0003DMT400018296 1172 pgsc_dm_v3.4
CAAGAAGCAAATGTATCATAACAAACAAGCTAAAACAACAAACTAAACATGTCTCCTTCA
TGGCTTACTACACTTCTTGCCTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCCTTGCC
CAAGTTCCACTTGAAAACACCTTCAAATTCGTCAATGAAGGCGAATTAGGACCTTATGTT
GTAGAATACAGAGTAGACTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTTTGT
TTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCT
GAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCCGTTAAAGAAAACGCG
ACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCGGATGCTGACGGTCGAATTGCT
TGGCAGACCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAATGGTAAC
ATGGTGCTACATGACTCTAAGGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGAC
ACATTACTAGTGGGCCAAACTCTCCGATTGTCCGGTCCGAATAAGCTCGTGAGCCGGGCC
TCGGTGAAAAAGAACGTAAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTCGCT
ATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTACG
TTGGAATCAGTAAAATTGAATAGTGGAAATCAAAGATTGAAATTGGATTATAGATTGGCA
AAATCAACAAAGAGAAGTTCACATGTGATGGCATTTACTAAATATAACACAACATTAACA
TATCTTAGACTTGAAATTGATGGAAATTTAAAGGCTTACACTTTTGTTAGAGATGAAGAA
GCAGATGAATTCCGTTGGAAGGTAACTTACCAAATGCTTTGAGAAACTTTTTAAAATAAA
AAATAAAATAATATATATTAAAAACGTAACTTTATAAGATAAGGATTTCATTTCCAGTAA
AAATAAGTGGAGAAAATGAGTGGGTCCACAGCTATTATTTTCCTTTTTTTTTTTGGTTGA
AGGGTGTATTTTATTATTATGATTTCTAGTTTTTTGTTTTCTGTTAAAGGATGTATTTAA
TTATGTTTTCTACTAGCTATGACAAATGTGAA
