Microarray Probes on PGSC0003DMT400016516
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_43998_PI426222305 |
JHI_St_60k_v1 |
AGTACTACCCCGAAGCGTGGAGGTGCAAGTGTGGAAATAATCTATTCATGCCTTAAAAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400016516
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400016516 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G14723.1 |
+2 |
2e-29 |
107 |
43/58 (74%) |
BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8440167-8440693 FORWARD LENGTH=109 |
Transcript Sequence (554 bp)
>PGSC0003DMT400016516 554 pgsc_dm_v3.4
CGTTCACCCCCCCTTTCATTGAATATCAACAATAATAGAATCCATCCCCACACCCAACCT
TCAACAACCCATAGAGCCATTCTCTTCAATTCTTCTTCTTCAATTCATGTTTCTCTCTTT
AATTGCACATTAATTACCTAACTCACACACACACACACACTATATACCTTCATTTGGGCG
TGCGATGGGCGGCGTATTACACCATAATTTCTCTTTTGCAAAAATAGCCACTTTAACTTT
CCTTTTGCTTACTCCACTTGTTTCTGCTTTTCGGATAAATCCCACTACAACACTCAGTGG
TAGTGAGTCAGATGTAATTGAACGAGTTGTGACTCAAAGAAAACTGAGTGGACCGGGTTC
ATCACCACCCACCTGCAGATCCAAATGTGGATGGTGTTCGCCGTGTAAACCGGTTCGGGT
TTCGGTTCAACCCGGTTTTAGTTTCACTTTAGAGTACTACCCCGAAGCGTGGAGGTGCAA
GTGTGGAAATAATCTATTCATGCCTTAAAAAAAATCACTTAAATAGTTAGTTCATTACTT
TTTTCTTTTTTTTT
