Microarray Probes on PGSC0003DMT400015576
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_41777_PI426222305 |
JHI_St_60k_v1 |
CATTTTAGTTCTGCCTAGCAAGGATCTGTAATAAGAAAATCTAGAACTATCCATTGCTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400015576
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400015576 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G22970.1 |
+1 |
7e-107 |
333 |
211/400 (53%) |
Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370 |
Transcript Sequence (2119 bp)
>PGSC0003DMT400015576 2119 pgsc_dm_v3.4
TAAAACTTGAAAAAGAAAAGAAAGAGAAAATAGAAAATAAAAAGTCATTCATATTTCTTC
CTCACATAGTCTTCCCTTTCCGGAGATAACGACAATCTCGTCGGAAAATGAATATTCCGG
CGACTTGTTCCTTTCTTCGCAAATGCAATGTTTGTGTTTCAGTTCATTACCGTCACGTTT
TTCATGAAAAATCTTCACCAAAAGCACACTCATTCGTTTCTTTTCCTCAGTTCTGAAGAG
AGTTAAGGTATCCAAAGTTCCATCGGTTTTATTTTTTCCTTTGTTTTTGAGTAAAACTAT
ATAGGAACTCTTTGATTGATTCGGTGATATATATATGTGCAACTGTTTTTGGTAAAGGAA
GAGGAGTCATACTTTTTGAGAATAGATTTAGGTGAATTTTGATATTAATTTTCTGGTATC
TGTGAGTTTTTTTTTGGTGATTTTCTGCGAAAAGGGCAAAGTTGTCTGTGAGGATTTAGG
CTGCTTTTAGTTGAGTGATTTTAAATGCAGAATTCTGATTTTATTGACATCATCACGGTA
AGGGAGTAGGTGTTCAAAGCTCTGAAAATTGAGCAGAACTGACAGAGGGAGTATAATTAG
GCTTAGATAGAGAGAGAGAGTCTGTGTCTGTGTGCACCGTTTTGATTGTGATAGAGGATG
CCTCCGACGAAAATTCAGCCGATCGATTCTCCGACAGACAGAGAATCGATCCAAAGCGAC
ACCACTAAGCCTGTGGTGAAATCGCGACTCAAAAGGTTTTTTGACCGGCCGTTCCCCAGC
GTCTTACGGATTTCGTCGGCGACAGAGAAGCCGAATGCTGCCGGCGCCAGTAATGAATTG
GCAAATGGAAAAGATGGAGCAGTGCCTGAATTCGAGCCTAGCTCTGTTTGTTTGGCTAAG
ATGGTTCAGAATTTCATTGAGGAGAACAATGAAAAGCCTTCACCTGCTAAATGTGGTCGG
AATCGTTGCAATTGCTTCAACGGAACCAACAATGATAGCTCCGATGACGAGTTTGATTTT
GCTGACTCAGCACACTCCTCCTTTAGCGATTCTGCTGATGCTCTCAAGAGCTTAATTCCG
TGTGCAACTGTTGTCGAGAGAAATCTGTTAGCTGATATCTCACAAATCGTTGAGAAAAAC
AAAGCTTGCAAGAGTAAGAACGATTTGAGAAAAATCGTCACCGATGAACTCTTGAAACTT
GGCTACAATGCTTCCATTTGCAAATCCAAATGGGAAAAGGCTCCTTCTGTTCCTCCAGGT
GAATATGAGTACATTGATGTGATTGAGGAGGGAGAAAGAGTGTTGATTGATGTAGATTTT
CGATCGGAGTTTGAAGTTGCCCGATCAACTAGCAGTTACAAGGCGGTTCTTCAATTGCTG
CCTTTCATCTTCGTCGGAAATTCCGACCGCCTGCTGCAAATAGTGTCAATTGCCTCAGAA
GCCGCTCGGCAGAGTTTGAAGAAGAAAGGCATGCATATCGCTCCATGGCGTAAAGCTGAG
TATATAAAAGCCAAATGGCTTAGCCCACACATCCGAACCGCCGAAGCCACAGTGAAGAGT
GAGGTCAAGGAGAAGCTTGCTGAAGAAGTTGAGAGTAAACAACTATCTGATTCTGAATTT
GGAGAATTAGAGCTGATTTTTGGTGGGCAATCGTCTTACGATTCCAATTCGTGTACGTTG
CTTTCATCACCACCGCCGCCGGTGAAATTTTCCGGCAGCGAGGAAGAGAAGCCGGTACAG
CCGGTGATGATGACGTGGGAACCTCCCGCATTGAAGCCCAAAAATTGTGAGAGAGGAAAC
AAAGTCATCGTCCCTGGATTGGCTTCCCTTCTCAGGGAAAAGCCCTAAGAAATTTTGTTT
TCTTTTTCTAATATAACTTGAAAAGAAAGAAATCTAGTAGTAGTAGTACAAAATATAAAC
ATATAAAAATATAGCGAAGGATGATCGGAGTTTCCGATATAGATCGGAAACCCTTTTTTC
CCTTTTTCCGTTCACCGTCTTTCCATTTTAGTTCTGCCTAGCAAGGATCTGTAATAAGAA
AATCTAGAACTATCCATTGCTGTAATAATTTTCCAAAATGCAAAAAAAAGAAGAAAATAG
AGAAACAAATTATCATTAC
