Microarray Probes on PGSC0003DMT400012224
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_30224_PI426222305 |
JHI_St_60k_v1 |
GATAACGGCGAGTTATTAGTATTTGATTCACGTGCCGTTTTACCATGTTTTCTTATTATC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400012224
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400012224 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G62520.1 |
+3 |
8e-92 |
281 |
166/308 (54%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits to 388 proteins in 26 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:23144506-23145348 FORWARD LENGTH=280 |
Transcript Sequence (1232 bp)
>PGSC0003DMT400012224 1232 pgsc_dm_v3.4
CGTCATTTCACACCTCTCCCTCCTTGACCGTCTTCATCACTCTCTCCTCTGTCATTTTTA
TATCGCGCCATGTCCCTTCCATTTCCATTTTCCTTCTCAGAACTCAAAAAGAGAAAGAAA
AAAAATTAGTATAAATTTTTACTAAAAATGCATTTTTATTTACATTTATAATATAGTTTC
AAGATTGAACTGTGGAGATTGAGAACAGAAAAGGTGAATTTTTGTTTTGTTTTTTGATTT
GAGCTTTGTCGTCGTTAATGGCGACTGGTTGGGTGAAATCATGGCAATGTAAGTCAAGAG
CTTTAGACGATGTCGTTAACAATCACCACCATCAATATCACATCTTACCCAACTCAGCTA
GTTGCAAAAATGGAGTCAAAAGCCTCAAAGATGTAGTGGAAAACACCAAAAATGGAAAAC
CCAGAAAGAAAAAACCGTCGCGGCAGCCGGAGCAGCAGTTAACGAAACGACCCGGACCCG
GTCCGAGAGGAGGTTCCGAACCCGGTTTGAATAGGGAGAAATCTCGAGCGAGTACCTCCA
CGAGACTATCACGTGCGGCGACGACTGATTCGTTCTTCCCGGCGTTAACTGAGTTACCGG
AAGGTCACCCATCGCGAAATGTAGTCGGGATAATTTTTCAGACGAGTTGGTCTCCGAAGG
TTTTTTCGGGTCGGGTTGAAATGGTTTTCAAAGTTCAGAATCTGCCCCGGACTGTGACCC
GGTTTGAGGAGTATAGAGAGGTTGTGAAGTCTAGAGCCGGAAACGGCGGTGAATCGGCGG
CGGAAAAGGGTGGCGAGGACCATGCACGTTGCGTTGCGGATGGGAATGAGGTGATGAGGT
TTTACTGCCTGGGACCCACTAACGGCGGTGCGTACGAAACTGGAAACAGCGCGTGGACGT
TTTCAGCCGGGAAAGGAGCGGCGGTGTGTACGTATTCCGGCAGCGGCGCGGCCCATGAGA
ATGCCGGCGGAGGGAGAGGGAGACGAGCTATGCTGGTTTGTCGGGTCATTGCGGGTCGGG
TCTGTAAACAACTCGGATTCGATTCGTTGATTGAAGGCCGAGTTGGATATGACTCCGTTA
GTGGAGATAACGGCGAGTTATTAGTATTTGATTCACGTGCCGTTTTACCATGTTTTCTTA
TTATCTACAAATTGTAAAAAAAAAAAAATTAAAAAAAGTATTGGCTTTAAAAAATCTCCA
ATTTTTATTTCATTTTTCTGGTTTTCCACTAG
