Microarray Probes on PGSC0003DMT400012004
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_20895_PI426222305 |
JHI_St_60k_v1 |
AAATCTATTGGGGGAGCGCAGAATAAAAATGAAATTATGGCCACGTATTCGCGGTCGGTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400012004
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400012004 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G12460.1 |
+1 |
4e-103 |
313 |
149/337 (44%) |
Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441 |
Transcript Sequence (1020 bp)
>PGSC0003DMT400012004 1020 pgsc_dm_v3.4
ATGGCTAGAATGGTACATGGTATCATGGAATTAATTGATCAAGAACATGAAGGTGTTAGA
TGGGTGATTATGGGAGACGACGATTCGATATTTTTCTTGGAAAATCTAGTTGATGTTCTT
GGAAAATATGATCATAACAAGTATTACTATTTTGGAGGTCAAAGTGAGTACATTTTATCT
AATTTTTGGTACTCTTTTAATCAAGGTTTTGGTGGTGCTGGAATTATTATGAGTTTTCCA
TTAGCAAAAGCATTAGCTCAAGATATGGAGAGTTGTTTAAGGAGATATCCACATTTAAGG
TCTGCTGATCTTATTACTATGACTTGTATTGTGGATCTTGGAGGTAGCTTTATTCCTCTC
AAAGGTCTTCATCAGATCGATTTGCACGGTGATATTTCAGGATTTTTATCATCGCATCCA
AAAGAGCCATTAATATCTCTTCACCATTTTGATGCTGTATCACCAATTTTCCCTTCAATG
GATCGTATACAATCAACAAAGCACCTTATGAAAGCAGCAAAATTTGATAATTCTCGTATA
TTACAACAAATAATATGTCACCATAGGCTTAGCAATTGGACATTTTCAGTATCATGGGGA
TATTCAGTTCATATTTATGAGAAAATTATGCCAAGGAGTCATTTAATTAAACCCATTGAA
ACATTTGACACTTGGAGTGGTAGACCTCAAAATCCTCCATTTTACATGTTTAATACGAGG
TCACATGTAAAAGATTCTTGTGAAACTCCTCATATTTTTTACTTGAAATCTATTGGGGGA
GCGCAGAATAAAAATGAAATTATGGCCACGTATTCGCGGTCGGTGGTGCGGAAGTTGCAG
GGTTGTCCAATCGACGGCAACCATTCGGCGAATTATGTCAACAAGATTCAAGTTTACTCT
CCTAGAAAAAAACGCGCAGAGATGGGTCGATGTGAGTGTTGTGATATTATTCACACAACT
GGTTCAAACAAGGCACAAGTCAAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAG
