Microarray Probes on PGSC0003DMT400011984
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_20758_PI426222305 |
JHI_St_60k_v1 |
TTGATCGAATTGTATCATCCGATGGACTTATCACCGTTTGTGGCTTCGGTTCTCTCCTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011984
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400011984 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G16060.1 |
+3 |
3e-125 |
368 |
175/233 (75%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:9094424-9096147 FORWARD LENGTH=289 |
Transcript Sequence (1258 bp)
>PGSC0003DMT400011984 1258 pgsc_dm_v3.4
AAAAAATGAGTCATCTTTCTCACAATATTCACGTGATACACATGACCACTCATTCTACTC
CTTCTGTATGTGTAGGTCTTCCATCGCTGCCGTACGCGCGTGTCTACACGCGCTTAGGAC
CTACTTATGTCGCCTCCGCCACTCATCCTCCTCGTTCACTCCGCTTCTCTTTTTCTCGCC
GGAGATATTACATTTTCCCGCGAAAATTCACCATGCCTTCCGCCTCCACCGCCGATTACC
CCGTCGATGGCGATGAGCTGAAATTTCCGTTGGAACTTGCCAATGAATCTGATTTTGATC
GAATTGTATCATCCGATGGACTTATCACCGTTTGTGGCTTCGGTTCTCTCCTCTCAGAGA
GGAGTGCTCGGAGTACATTTCCGGATCTGATCAACTTCAGAGTGGCGAAAGTGAGTGGAT
TTCGGAGAGTGTTTGCTCATGTGGCACCTATTTTCTTCGAGCGTGGAATAGCTAAACCTG
AAACAAAGGAAATATCAAGCTTGAGCGTGGAGCCCTGTGAAGGGGAAACTCTTATAGTTA
CTATCTTTGAGATTCAGAGATCGGAGATTCCAGCATTTATTGAAAGAGAGCACGAGTTTC
GGTTTTTAGCTGTAATCCCGGAAACACTAAATGAATTGTTTTACATCAATCCAGCTATTA
TTTGTGCCCGTTATAGTGATGAGGAATATCTGAAAAATAGATGCAAAGGTGATAAAGACA
TCTTCTTCCAGCGGTATGGACGGTACAATATTAACAAGTTATGGCGAGATGATATATTCC
CTTGTCGTGTCTATCTCCGTCATTGTGTCCTGGCAGCTCAAAATCTCTGTGATCTAGCCT
ACGACAACTTTCTTGATCATACCTTCCTTGGTGACCGTAGAACTACAATACGCGAGTACT
TGTCAACAAGTGGTTCTGGAATCATGGAAGAGGAGCCTCCAGAGTTGTTAAAAGAACGAT
ATGGCGGTTGAGTCTGATGCTGAGTGAATGAGATTGCACGATTTTTAGTTATTCCATTAG
ATATCAAGCAACTTTGCTGACTAACTCCATATTAGGTTATATATCAGAAATATTTGTGAT
TTGCATCACAAATAAACTGCATTGACTTGTAATCTGTATTGACAAACTTCTGCTCAATCA
AAAGTGAGTGTTTTTCGACACGAAAAGTGCGATAATGCTAATATGTCTATCAAAGTATCA
AGTTGAATATGATGGAATTTCATATGCCTTTCTGAATGTACACTTGTTTGGTTTTGTC
