Microarray Probes on PGSC0003DMT400011707
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_20687_PI426222305 |
JHI_St_60k_v1 |
TTAGAAAGGCTCGAACTTTATTCAATCAAGAATCATCTAGAGATAAGAAGTCGCATCAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011707
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400011707 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G48330.1 |
+2 |
2e-15 |
70 |
34/66 (52%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17863897-17864124 FORWARD LENGTH=75 |
Transcript Sequence (847 bp)
>PGSC0003DMT400011707 847 pgsc_dm_v3.4
ACATAGAATAAGATCATATAGTAAACACAAAAAAATATTTTACCATTTCATGGCAACTTA
TCATCATGATAGAAAATCTACTTCATGGGTTCGAACAATCACATCTCCTTTTAGAAAGGC
TCGAACTTTATTCAATCAAGAATCATCTAGAGATAAGAAGTCGCATCAAGAAGGGCCAGA
GAACCACATAGTAAATTTGCAAGTGGAAGTAATGGCTTGTCCATATGAAGATGTTCAAGT
GATGTGGTCAATTTTGGACAAGTCAAACCCAAGAACTTGAACTTGTTTTTTTAATTGGAT
AAGCTATCAAGAATCAAGCAATTTATGTACATAGTTGCTAGTTGTCTTGAAGTAGAGCTT
TGGAGTATCGGTAAAGTTGTCGTTGTACGATTTATAGGTCAGGATTCAAGTCGTGGAAGC
TGATGTGGCCCTTTTTCTGAACTTTCTGTAAAAATAACGGGATGTTTTGTGTACTAAACT
GTCTTTTTTTTAGTTGCTAGTTGTCTTGTGGATGTGGTGGCTATACTCTTGACACCCAAA
AGCAAGATTTGGAAAATTTGTTAACGCTTCTTAGTTTGGTTAGGTAGAAAAAACAAGTGA
CAAATTGGTTGTTATTCAAGTTATAGACTTGTTTTTTATGCCAATTTGTTTGTTTTTTTT
AGTTCAATCCCCATGATCATTCAATATCATGGAGAGATTTCAACTGTATTTGGAATTGTA
TTGTAATTTTACATTAAAGGGTTGTTTGGTTCACAAACAAATTATGCAATAATTGTTTAT
GTGATGAAATAGCAATGATATGGTTATTATGATGTGGTCAAATAATGAAGAAATTATTAT
GTAATGA
