Microarray Probes on PGSC0003DMT400011014
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37861_PI426222305 |
JHI_St_60k_v1 |
GAGCTCCTGACCACATGTCAATAAGTTGGGGGATTTTAGCTTAAAAGTTTAATCTTATAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011014
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400011014 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G63520.1 |
+2 |
3e-51 |
187 |
157/560 (28%) |
carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538 |
Transcript Sequence (2123 bp)
>PGSC0003DMT400011014 2123 pgsc_dm_v3.4
TGAATAATAATTTCTAGAGATGGCTGCTAATAGTTATTCACTACTTCAAGTGGTCACCAA
ATGCTCTTTGCAGAAGCCTTCACGTCCAACCAAACTTGAGCACTCCAGGAATCCACTCTC
ATCTACTTTCAAGCCAATATTACTGAGGGAGTTGGACCATTTTCCAAATATTTCATTAGA
CGTTCCAAAAGCTATCAAAGACGCTTCGTTCAATTTATTGGAAGCTTTTGTTGACTTTAT
ATGTGAATTCGTTGACCAACCATTGCTTCCATCTAAGAGTAATTTTGCACCGGTGGAAGA
GATGATAGAAGGTACAACAGTAGGAATAGTTGAAGGGAAAATTCCAGATGATTTTCCAGA
GGGTGTTTACGTAAGAAACGGGCCAAATCCTCTATTTGGAGGACTGAAATCGACGAGATC
TATATTTGGTGAATCGAGCCATATGTGGATTGAGGGTGAAGGAATGGTTCATGCTCTCTA
CTTAAACAAAGAGAATGGCGGAAAATGGAAGGCGTTGTACAAGAACAAACATGTCCAGAC
AGATAGCTATAATATGGAAAAGGATCGAAAGAAACCAGGTTTTCTTCCTGCTATTCAAGG
CGATTCTAACGCTATACTCCTCTCCTACCTTCTAAATTTGTTGAGGTTTGGTGTGACAGA
CAAAAGTCTGAGCAACAGTAATGTGTTTGAACATGGAAACAAATACTACTCAATTGCTGA
GAACCATATGCCTCAAGAGATCGACATACATTCCCTACAAACTAAGGGAAATTGGAACAT
TTTAAGTGGATCTTGGAATAGACCCTTCACAAGCCACCCAAAGAAAGCACCCGGGACGGG
AGAACTAGTTATAATTGGTATTGATGGAAAAAAGCCTTATATGGAACTTGGTGTGATTTC
AGCCGATGGGAAAAAAATGGTTCACAAAGCGGATCTCATGTTCGATAGATGTACCGTTTG
CCATGAAATAGGAGTTACACAAAGATACAATGTGATCATGAATTTCCCGCTAATAGTTGA
CATAAGTCAACTTGTTCTTGGAGGCCAGTTAATGAAGTTTGAAAAAGATGGATATGCAAG
AATTGGGATAATGCCACGCTATGGTGATGCCAATTCCATCAAATGGTTTGAGGTCAACCC
TTGTAGTGTATTTCACATCATTAATTGCTTCGAACTTAATGATGAGGTGGTGGTGAGAGC
ATGTGAAGCTCGTCAATCAGTTATACCAGGACCTAGTTCTAGCATCAACCATTTTGACAA
GTTCTCCAAATGGTTGAAAAGGGAAACAAGTTCCACAAATGGCGACTCTCATGAGTTCAC
AAAAGAATCAACTTTTTCTCGTGTTTGCGAATGGAGATTAAACATGAAAACTGGACAAGT
TAAAGAGAAGAAGAATATATTTGGAGATGAGTTTGTAATGGAATTCCCTTTCATCAATGA
AAATATCTCAGGATTTAGAAATAAATTTGCTTATCTACAAGTTGTTGAGTCCACAGAGGT
GTCTGGCTCAGGATTCTCTAAATTTGGTGGGCTAATCAAGGTTCATTATGAAGAAAAGAA
AACCTTTAATATGGATGAAGAAGATGAATTGATTAAAGCAGAATATCACATGTTCCCAAA
GAACACATTTTGTTCAGGAGCTTCATTTGTTCCAAAACTTGGAGGCATCGATGAAGACGA
TGGTTGGATAATTACATTTACGCATAACGAAAATGAGAATATTTCTCAAGTTTGTATAAT
TGATGCAAAGAAATTTACGGAAGAGCCAGTTGCTATTATAACTTTATCGAGTAGGGTGCC
ATACGGATTTCATGGAGCTTTCATGCCATTAACGTCTTAAAAGTATACTATGTGATTAGG
AATTTTAATATAAGCAATTAAAATTATGTATAAAGTGGCCGTCTGATGCACTAAAGCTCC
CGATATGCATAGGGTCCGAGGAAGGATCCCGACCATAAGGGTCTATTATACGCAGTCTTG
CCTTGCATTTCTGCAAGATGCTATTGTTAAGGCTTGAACCGATGAGCTCCTGACCACATG
TCAATAAGTTGGGGGATTTTAGCTTAAAAGTTTAATCTTATATATGTTCTATGTTTATTT
AATTACCTTGCATTCAATACTCT
