Microarray Probes on PGSC0003DMT400011006
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37879_PI426222305 |
JHI_St_60k_v1 |
GGAGATGAGTTTGCAATGGAATTCCCTATCATCAATGAAAAGTTCTCTGGATTTAGAAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011006
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400011006 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G63520.1 |
+1 |
4e-55 |
197 |
160/562 (28%) |
carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538 |
Transcript Sequence (1824 bp)
>PGSC0003DMT400011006 1824 pgsc_dm_v3.4
ATGACTGCTAATAGTTATGCATTACTTCAAGTGGTCACTAAATGCTCTTTGCAGAGGCCA
TCACTTCCACCCAAACTTGAGCACTCCAAGAATCCACTCTCATCTACTTTCAAGCCAATA
TTGCTGAAGGAGTTGGACCATTTCCCAAATATTTCATTAGACGTTCCAAAAGCTATCAAG
GACACTTCATTCAATTTATTGGAAGCTTTTGTTGACTTCATATATGAATTCGTTGACCAA
CCATTGCTCCCATGTCAGAGTAACTTTGCACCGGTGGAAGAGATAGGAGAAGCCACAACA
GTAGAAATAGTTGAAGGAAAAATTCCAGACGATTTTCCAGAGGGTGTTTACATAAGAAAC
GGGCCAAACCCTCTATTTGGAGGACTGAAATCTACGAGGTCTATATTTGGTGAATCGAGG
CATATGTGGGTTGAGGGTGAAGGAATGGTTCATGCTCTCTACTTAAACAAAGAGAATAAT
GGTGGGAAGTGGAAGACGTTTTACAAGAACAAACATGTTCAGACAGATAGCTATAATATG
GAAAAGGATCGAAACAAACCAGGTTTTCTTCCGGCTATTCAAGGCGATTCTCCTGCTATA
CTCCTTTCCTACCTTCTAAATGTGTTGAGATTTGGCATGATAGACAAATACCTTAGCAAC
ACTAATGTGTTTGAGCATGCAAACAAATACTACTCAATTGCTGAGAACCATATGCCTCAA
GAGATCGATATACATTCTCTACAAACTCAGGGAAATTGGAATTTTCCAAGTGAATCTTGG
AATAGACCCTTCACAAGCCACCCAAAGAAAGCACCTGGAACGGGAGAACTAGTTATAATT
GGTATTGATGCAAAAAAGCCTTATTTTGAACTTGGTGTCATTTCAGCTGATGGAAAAAAA
ATGGTTCACAAAGCGGATCTCATGTTCGATAGATGTGCTGTTTGCCATGAAATAGGTGTT
ACACAAAGATACAATGTGATCATGAATTTCCCGCTAACAATTGACATAAGTCGACTTGTT
CTTGGAGGCCAGTTAATGAAGTTTGAAAAAGATGGATATGCAAGAATTGGGATAATGCCA
CGCTATGGTGATGCCAATTCCATCAAATGGTTTGAGGTTGACCCTTGTTGTGTATTTCAC
ATCATTAATTGTTTCGAACATAATGATGAGGTGGTGGTGAGAGCATGTAGAGCTCGTCAA
TCAGTTATACCGGGACCTAGTTCTAGTGTCAACCACTTAGAAACGTTATCCAAATGGATT
AAAAGGGAAACAAGTTCCATAGATGACGACTCTCATGAGTTCACAAAAGAATCAACTTTT
CCTCGTGTTTGCGAATGGAGATTAGACATGAAAACTGGAGAGATTAAAGAGAAGAAGAAT
CTATCTGGAGATGAGTTTGCAATGGAATTCCCTATCATCAATGAAAAGTTCTCTGGATTT
AGAAATAAATTTGCTTATCTACAAGTTGTTGAGTCAACAGAGTTGTCTGGCTCAGGATTC
ACTAGATTTAGTGGGCTAGTCAAGCTTCATTTTGAAGAAAAGAAAACCTTTAATATGGAT
GAAGAAGATGAATTGATTAAAGCTGAATATCACATGTTCCCAAAGAACACATTTTGTTCA
GGAACTTCCTTTGTTCCAAAACCTGAAGGCATCGATGAAGACGATGGTTGGATCATTACA
TTTACGCATAACGAAAATGAGAATATTTCTCAAGTTTGTATAATTGATGCAAAGAAATTT
ACGAAAGAGCCAGTTGCTATTATAACTTTATCGAGTAGGGTGCCATATGGATTTCATGGA
GCTTTCATGCCATTAACGTCTTAA
