Microarray Probes on PGSC0003DMT400010961
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24333_PI426222305 |
JHI_St_60k_v1 |
CCTACTTACATTGTCAAGTTGCTCAAAGGGGAGGAAACAATGGTTAATAGTCGTTTTTTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010961
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400010961 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G25330.1 |
+3 |
4e-27 |
110 |
61/186 (33%) |
unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12957834-12958683 FORWARD LENGTH=229 |
Transcript Sequence (1740 bp)
>PGSC0003DMT400010961 1740 pgsc_dm_v3.4
TGACATGGGAAAGCTACGGATTACTGTAAATTCCATTTTCCCACAATTTTCAAAGATACG
TACACATACGCTCGAAGTTTCCAGAAGATTTGAAGAATTTACCGGTGCCGGAAATGAAAA
AATCCGACGGAAATCCGGCGAAGTACGATTTAGAGCATCGGTACAAGGGAGATGACTCAT
GGTACGGTGTGCTAGTCACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATT
CTGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTCAAATCGAAGGAGGAAATCGATG
AATTCGTCAGGAAGTTTAGGAATGTCTCGCCACAGCTACAGGATAATGAATGCGGTAGTG
TTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTCGGCAAAGACGATATGCTCT
TCTACGATGCCGTTGTTGAAGCGATACATAACGAGAACCATACGTTTCACAATGGCGTGG
AGGAGTGTGTATGTACCTTTGTACTATCCTGGCTTCATGGCCCAAAAAAGGATGACTTGG
CTAATTCTGGAATTGAAGGCATATGTATCATAAAAGGCACAACACAAGTTGATCCTAGAA
TATCCTCCTTCTTGGAATTGGTAAACCAGAAACTCAGAAAATCTTCTTGCAAGTCAACTT
CTACATCTGAGCAAAACAATTCAGCATCCAAAGGATCATCCCGTACAAAAAGAGTCAGAT
ATTTGTCTTCTGAACAAAAGTCAGATTCGTCCTTTAAGGGGATTAGCAGTGCCAAGAATG
CAGTTGACGTGAGATGTACAACAGAAGCAACAGACTCTAGCAGGCATTGGGATCATGATA
AAGATCTAGGAGGACAATGTTCAAATTATCATCTCATGCTAGTCGAGAACTTGGAGAGAA
CCTTGTTCCCTTCTTCATTGAGAGATTTCATACATAAGCACACTTCTGTTTGGTCACAAG
CATATATTTCCCCCTGCCCATCATATATGCCCTATGCACGAGGCATTATCGTGGTAGATT
GTGAAGAGAAGCTTAAAGAAATAAACCGTTTTTTGGACAATCCAACACACCTTGTTGTGT
CCTCAAAGGGAAGGCCGATGGTTATAAGTGAAAGAGATATGAGACAATCCATGATTAAGA
CATCACTTGGGAGCTTAATGTACAGTTCCCAGGATATATATCAGGCAAAAAGTATCTGCC
AAGACTTGATAATAGTTCACTCAGGAAGTGAAGCATACATAAAAGCAAACCAGGCAAAAG
ATTTGTTTTTGGAGTTTACGAGTCATCAACAAAGACTCTATAAGAAGTTAGCTTCGGAAG
AAAGGTTATTTTTGCAGATGCTGCAATTACAACCGCGTTTGGATTTGTTTCTGTGTTAAA
ATAATTACAAAGTGACTCAATTTGTGTGTATCTTGTGTTTCTGTAATGTCTCAAGATTTC
TTTTCCTTTAACTAAACCTGTGATGATACGCCTTGTAGAAATCTCACTGTGTGCACAGTT
CTTCAATCTTTCTTGCTCTGGAGAAATGTCACTGGAAGGTGCTGCATTCTTGTTTCCATA
TTCTTTGAATGTGAAAAACTGGCGTTGTTTAGTATAAATACCTAGTTAATATTCGAAAAC
TGCAAGTGTATTGCCATATGCATTATTGGAAGTTGGTGGTTAATGTTGTTAGTAGCACCT
CCTACTTACATTGTCAAGTTGCTCAAAGGGGAGGAAACAATGGTTAATAGTCGTTTTTTC
