Microarray Probes on PGSC0003DMT400010027
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_44291_PI426222305 |
JHI_St_60k_v1 |
CTGGCTCTTACTTTGTTATGGCTGAAATTTCTAACTTTGTTATACGAACGTTTGGATTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010027
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400010027 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G62870.1 |
+1 |
3e-51 |
181 |
122/261 (47%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr1:23284220-23286508 REVERSE LENGTH=762 |
Transcript Sequence (981 bp)
>PGSC0003DMT400010027 981 pgsc_dm_v3.4
ATGGCGTCTGCTCCAAATACAACTACTGCTTTAGCTACTGTGGAATCGACCGTCGGCGTT
GGTGTTGGCGGCGGCGGCGGCGGCGGCGGCTCAGCCGATGAACTTAATGCTAAGGCAGTG
CATAAGAGATATGAAGGGTTGGTGATGGTACGGACTAAAGCTGTAAAAGGGAAAGGGGCT
TGGTATTGGGCTCACCTTGAGCCGATTTTGGTTCAGAATTCTGATACTGGACTTCCTAAA
GCCGTCAAGCTTCGTTGTTCTTTATGCGACGCTGTTTTCTCTGCTTCAAACCCTTCACGA
ACTGCTTCTGAACATCTCAAAAGAGGGACTTGTCCCAATTTCAATTCTGTTGCAAAACCC
ATTTCGTCAGTGCCGCCTTCTCCGTCAACTACCGTCGCCTTGTCGCCGGTGTCTCCGACT
CCGTCACATCAGCAGCAGCAGCAGAATCATCGTAAACGGAGCTCTTCCGGTAGTGGGGGT
GGCGTACGTGGGGGTAGTTCAAGTTGTGGCGGTAATGGTGGGGTTGGGGTTGGAGGGAGT
GTGACGACGTCGTATCAAGTTCCACCTTTAGCTATTGTTGATCCAACAAGATTTGCAGTA
GAGTTAGCCTATTCCCCTGGTGTTTCAATGGCTACCTCAATTGTCACTGCCGCTGGTACT
GGTGGAAGTACGCCGGGAAGTGGTGGTGGTAGTGCTGTGTATGGGCAGCAGCATTTGATG
TTGTCAGGTGGTAAAGAGGATTTAGGGTCATTGGATGATTGTGAAAAAGTTGTGAGAGGA
CCCAAAGTTGAAGAATACTGTCGGCATGAAGCAACACAAGAGAGATGCTTGATAGCGACA
TGGCAACGGAGATTGACTAATTTTGCTGGTTACCGGATGACTTTCATTAATGAAAAAACA
TCATTACCTGGCTCTTACTTTGTTATGGCTGAAATTTCTAACTTTGTTATACGAACGTTT
GGATTGAATGTGGGATTATAA
