Microarray Probes on PGSC0003DMT400009426
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5046_PI426222305 |
JHI_St_60k_v1 |
CCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTGTGTTAAGGCGGAGGAATACAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009426
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009426 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G17710.1 |
+2 |
6e-07 |
51 |
30/71 (42%) |
unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7693856-7694554 FORWARD LENGTH=152 |
Transcript Sequence (4986 bp)
>PGSC0003DMT400009426 4986 pgsc_dm_v3.4
CATTATTATAGTAGTGTAGTAGGAATAAATGAAGGGTGGTCTGGTTTTATAAGTTATTGT
TTATTTTGACAGAACAAGACTGCAGCAAACTTTTGGTGTAATATAGGTTTATGAGCATTT
TCTAGTATAGGGAACTGTAGACTACCTTTTCTTTCAGAGCTATGTCCACCCGAGAAGGAG
AAATAATTTTATTTTGCAAGAAGATTTCTGTGCTATTAGGAAATATAGAGAACTTTTAGT
GATAGAGAGCCTAAATTATTAAATATTTGATTGAGATAGATCTAATGGAGCAATATACAT
TGTGATGATTCGTGTAGCTGACCCCACTATATTGGATTGAGGTGTATTTGTTGTCATTAT
TTTGACTGTTGGCGTTGCAAAATTATTAGTCATCTTATCTGCATTTCTGCTGAAAGATTC
AATTATAAGCCAACTGATGGAGGTTAAAGATCCGTAATGTTTTTGTTTGCCGTAAATTTA
TAGATTAAGTTTTGCCTCTAAGTCTGCAGTTTCATAAGGTGCTCAGGAGTTGATTCTCCC
TTTCACAGTGGGGAAATCCTTTATATATTTATCTTGATAATGAACATCAAGTTCAAATAT
GTGTCGTTGGGTACGTTTGTGCTGAGAAAAGAAACATTCCGCCAGCCAATTCTCAGAACA
ATAATGAATCTTCCGCGAGGTAGAAGTGTGGGGAGTTGGGCAGGAACTAAGATAAAAATT
CTAGCAAGGTTGATCTTAGTAGTTGTAACTTGATGAGATCCCGGTGCAGACATGTACTGA
GATAATTAGTTGTCTCGATCATGGCTGGACAAGATTCATGTTGAAGTTCTGTTTCCTTTT
AATTTATGTATATCTCTCTCTTTGAGAGGCAGGATATGCTTAAGTTTCTTGATTAAAGGG
ATTGTACATATTGTCCATTGGCCACTGCTACATTCACAAATTTCTGACATCAGTATCATT
CCTACCATTCTAACTCCACTGATAATGAGTTCGTGTTCAGTGTTGCTTAGCAAAGGGAAC
ATGTAGCAAGACACAAAAAAGAACAGCATAATGGTGGTTATAATTTCTAGTTAATTGGTG
ACCAAACTGCTGAACTGAGGATGATGATGTCTGTTTTATAGTAAATTAAGCTAGTGGTTT
AGAGGTCTGGATCGATAGCATACTCTCCTGACATTTGCTCTAGGATTTCTGAAAGTTTGC
CAGGATCATTTTCGAAGGGCTTTAGCTCAATTATAGTTTCTGTAGCTCAATTAAGGAAGA
TATTCTAAATCCAACAAGAATCCTATTGAAAAAATAGTCACTTGGGACTCTGAAAATGAA
GCAGAACAAAGTTGATTGTGTTGCTGATGGAAAAAAGTTTAAGTGGATCGCTGCACTGCT
TCACGACCACCACCACCATCACCACCATCACCAAGCAGGCTTTCTTCTAGCAGGAAATTG
TCATTTGTGCAGATGGCTGTGGTAAGTCTAACCAATAAGGAGATTGCTAAAATATTGGAA
GCAGAAGCTCTAGACTGCGGAAAATTACTTCCTTGGTGCCATTTAAGGCTGCAGTCGAAA
TCAGGGAAGAGAGACAATCTCTAGGTGAGGTTTAATATTGATTTCATTAAAGACAGCATT
AGTACTTGCAGATTAGTAAATTTTGATAGATGAATCATTTTACATTAACCTTGATGACAA
CTATAACAAAAGACAATCTGATTTTTTTTTTCAGGAGGTTGATTAATTTAGGGCTCTTGT
CCTGTTTATCATTTGTTTAACACCTACCAGCTCATTGGAATTGCTTCCCCTCTATCAAGG
ACTCATCCTGTTTCTTGTCCTGATTGATATCATTGTTTTGAATATTCTTTCTCAATTTTA
AAGTTTAGGCAATCAAAAGTAGTGACTAGTGAGGAAGTAGGAGATCAGTCAAATCATACA
ATTTATGACTTACTGTACAACTTTTCCTTCTCAGAATAGAAATAACAACTATTGAGTGCT
AAACTTTCTCTGTGTATCCTCCTAATAAGATTCCTTAGAAAGTCAAATTGATCGAGTGGG
TCAATTATTGTTTGAAGGACATCTAGTACTACTACTAATACAACAACATACTCGGTGTAA
TTTTACAAGTGAGGTTATATGAAGGTAGATAAATTATTCTGATAGACTATCGGTTCAATA
TGGGATGCTTATTAGTATTCTATATCTGCCCCATAAGCAAAATCAATCTACGTTGCATTA
TTTTAATTTTCAAGTGTGCTCTCTTATTGGCTGATGGGCCACAATAAAGTGGATGATAAA
ATATGTGCGTGGGACTATACCGTGTTATTTTCTCTCTCTTGAATATTTTATGAAGCTGGA
AGAAGAGATGCTGAAGCTACTCTGCGTTAAAATCAACTATGACTGCGATCTTTATTGTTT
TTAATCTCCCTTTCTTCCAAATCTATGCACCAGTGTAATCTGAACCGTCAAGATGAATCT
AGAAATTGTACCAGATAGGAGTTTTGACTGTAAAAATTGAGAACATAGTTATCCCACCTG
CTACTCATCAAGAATGTTTGGTGTTCATTTCTGTGATTTCACTTCAGTGACTGCTCAAGG
TTGGTTTTGGTGTTTCTGGCAAGATGGGCTGACAAAGAAAATTAGACTTACTGTGTGAGA
GGATAAGATAAGATCTCAACATTTGAATAGAAGAAAATAATCTTTTCATGATGTTGCGTC
TTGTAAAATTTGAAGTAGTGCATATTGTCCACTATTGCCGTCAAAAGTATCCATCCAATA
TCATTTTTAGCATTGCACTTGCGATGGAAACTATGTTGCTTTTTGGAAAGAAACTTTTAT
CACGACACACAAAAAAACAGAGACAATGGTGGTGGTTAACTGATAATGCCCCACCAAATT
GCTGACATAAGGATAAATGATAATGACAGGCCGTTTTCTAATTTCTTAGTTAATTAAGCA
AGTGGCTTAAAGGTCTTCTATCAAGGTCATATTCTATTGTCATTTATTGTAAATATATAT
CCGCAAGTTTGCCATAATCAAGCATACTCCTTCACAGTTTTCAAAGGCGTCTGTCTAGAT
CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTATATCA
AGCCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTG
TTGGTATGGTGCACTGGCCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAG
GTCTCAACTTGCAGTCATATTGTGGTGTAGTACATAAATATATTCTTCATCATCTCATAA
TCTTGAAAGCTCAAACTTCTGAATCCAGCAAGAATCTATTGAAATCATGAAGCAAAGGGA
AGGTAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATGGCTCCAGCACCTCCACCACC
ACCACCAACGTCGAGGTTTCTTCTTAGCAGGAAAGTGACAACACCAAGCCAGACCAAACA
GGAGATTGCTAAGTATTGGAAGCAGAAGCGCAAAACTGAAGAAGACCACTTCCTTGATGC
CATCAAGGCTGCAGCCAGAATCAGAGCACGCAATCTCTCAGTAAAGTTTTCATATCAGTT
TATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTACATACACTTTGTGAACAA
CTATAGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGCTT
GCCATAAATCTTTTGATAAAGCATAGAAAGTGGGAGATATGTCAAAATCACACAATATGA
CTCTGCAACTTTTCCATACTTTGAATAGATTATACTTGAGTGTTCCACTTTCTTTGCGTA
TTATCCTACTAATAAGATTCCTTAAAAGTCATATATTCAGCCGAAAGGGCCAATAATAAT
AATTAATTGATGGATAACTACTATACTTCTATGCCCATAAGCAAAAGCTTATTATGTAGG
TTGCATTATTATATACACAGGGTCCCAATAGGCTACTATACAAAGATGATAACATTATGT
TTTGGATGAAGATCCATTGTTATTTTCTGTCTCAGTATGAATATAATATAAGTTAAAAGA
GATTCATAAGTTGCACTTGGTGATAAATATAGCCACTGACTGTGACCTAGCTTTTTGTTC
CCCAATTTTTCTTCTATGTCCTAATCTCACTACTAATTTTGTAGAAACTGTGAAGATGAA
TTTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATCTTGCTC
TGTAACCTACTACTGGCAACTGATGTACAAATAGAGTCCCATCTCCTGACCGATAGAGGG
AAATACTTATTTTTCTCGAGGATACCTTGTGAATTGTGAGAAAGCATAGACAAAATGAAA
TAAGATTGTCCTAAGTTATAGTAATTGATTTAGATTCCATTATTTCGAATTAACTTGCTT
ACATATTGTTGGTTGTGTTAAGGCGGAGGAATACAAATACTTCGTGTATTCCTTGAAGGT
AGATGATGATGACATGGAGAACAAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAA
CATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTGGACGAAGAGCAAATATGCATATCT
AAACCAGCCTGCACTGAAGTCCATGGAACGCCACAGCTCCACTTATATTCCGCAACCATA
TTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACTTTTGGGATCTTCTAGGCAATTCA
TGATGCCGTTCACGCACACAGAGTCATATTTCATGTATGTGTTGTATATTGTGCTTGTAT
ATATATCATTGTTTGTTTAAGTGTGTGATACTCAAAAGGAAGTATCATATATATGATCAT
TGAAATTATTGTATTGGGGTTGTGAACTACTCTGATGCACCTGTGGTGGAAACTGCTGTT
AATAAATAATGGTTCTATTATTGGAGATACTCCATCTATTTCAGCTTTCAATTCATCAAG
TTTTTG
