Microarray Probes on PGSC0003DMT400009059
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5247_PI426222305 |
JHI_St_60k_v1 |
GTGAGCTATGATTGTTAGGCTCAGAAAGTTAATAGTGTGGTTTGGTTTTCTATCTTTGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009059
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009059 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G66440.1 |
+2 |
1e-32 |
124 |
92/259 (36%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252 |
Transcript Sequence (1240 bp)
>PGSC0003DMT400009059 1240 pgsc_dm_v3.4
CTAAATTCCTCACTCCTTTACTCTTCTCTCAGTAAATAATAGTAAGTAATAAGCAAAACC
GTCACTACATATCTACTCAAATTCCCTTTAGATTTTTCTGTGAAAAACCAACTTTTTCAA
TCGATCAGCATAGCTTGTTTTCATTGCTCTACAAATGGATGCTTTCGATTTCGGTACTGA
AAAAATGGAAAACAGAGTAATTCTGATATTCCACAGTTTCAAAAGCGTTGCCAAGCTTTT
TCGAATTGTTGAGCTTTGCGTTGGAGTTTTTGTGCTCTTATGGAGTTCTACTCGGTTACC
TTTTGTCGTCAAAATATCCGGCGAGTATTTCCGGCAACTTATCTCCATAATACTTAGCCC
TCTCTTCATTTTCCTTATTAGCAACGTCATCGTTCTCACTCTCTTCTTCAAATCTGGCCG
ATTCAACGGCGATTCATCAACGATCTCAAATAACACCGAAACTGAACTCTACGATTCATT
CATCGAAAAGGAAGAATGCTCCGGGAATTTCACCGCCGGAAACTCCTCTTCCGCACCGGC
ACGTGAACAAACTGTCTACCAAGACAAACAGACTATACTTGAAGTGAATGCTCAGACGAT
TTCGGAATCAGACGGTTCCGAAGAACCAGAGACGGAAACTGAAAAGGATTTTTATTCTCA
AATTCCACGGAGAACTAAATCGGCGAAGTTTGAAAGGGGAAGTAACAAGGAAATATACGG
TAAGCTTCGTAGATCGGAGACAGAGATGTACCGGAAAATCGATAATTCCGTTGATCCATC
GGAAACAGTTTATCCAGTGGATGAATTAAGCAATGAGGAGTTTCAGAAAGCCATTGAGGA
TTTCATTGCTAGGCAAATCAAATTTCATCAGGAAGAGAAGTTGGCTATTGTTCTTCATAG
CTAAACTTAATAAAGTGTATTTCTTACTCAATATTTACTGTATTGCCCATTAAAAGATAA
AAAAAATAGATAACATAAAATTAGGGGTTAATGTACAGATCAGTTAATGAATAATAGGAA
GGAGGCGTAAATCTGATGTGGAAAATAGGGGGAGAGCTCGTAGTTAATCTGAGCCGTTGA
TCTTTGCAGCGGATAAGAAGATTCAGTAATTCCGTGAATGCGTTGCGCTCGCTGTTTTAC
AAGAGTGAGCTATGATTGTTAGGCTCAGAAAGTTAATAGTGTGGTTTGGTTTTCTATCTT
TGTATTAAAATTAATTAATCAAGATGGAAAAAGGGAAGGA
