Microarray Probes on PGSC0003DMT400005782
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48398_PI426222305 |
JHI_St_60k_v1 |
TCTAAAGTATAGAAGATGGCTATTTCAACAAAGCTATGCCTCAATCTCTCCCCACAACCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400005782
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400005782 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G25625.1 |
+1 |
2e-16 |
75 |
61/161 (38%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10906562-10907099 FORWARD LENGTH=152 |
Transcript Sequence (915 bp)
>PGSC0003DMT400005782 915 pgsc_dm_v3.4
TATTAACAAAAAGGAAAAACAAAATTATAGTACCTATAGCAATTGTACTACTACTCTTTG
TTTTCCTCTTCATTTGTTTTGAGAAAAAAATCTAAAGTATAGAAGATGGCTATTTCAACA
AAGCTATGCCTCAATCTCTCCCCACAACCTCCTCCTACTTCTAATTATAATCATAATAAT
AACTCAATTCCTCCACCTTCTCAAGTTTCTTGGCAACGAAAAGAAAAATCATGGAAAAAT
CAATGTGTATTAGGGATGGCATGTGTTGTAATTATTGGATTAGAATTTGACAGCTCAATT
TTAGGTAATCAAGAAAGTACGATTGCGATCGCCGGAGACATGCAAATACAATATGTCGCC
GGAAAATCAATACAAAAATGGAGTGAGAAAAGATCGTGTCCACCGTGGAACGTGAACTCG
TTAGAAACCATCGTGCCGGAAAACCTACCGAGGCCGGTGACTCGCCGGAGATGGGAAAAC
GTTGATTATAATACCACTACTCAATCTGCACCTGAAGTAAAGTTAGTGACAAAATTTAGT
AAAGGGTGTTTCACTATGTGAACATACTAATTAAGTTTAATGTGTATATATAGATAAGGA
GTTCCTTCGTTGATAATAGGACAAAATATTTTTCCCGTTTTATATGAACATGTAAATTCT
GTGACATAATAAAACATTCAGTATAGTTATAATTTGTATAAAGTTATTTTTAAAAGTTGA
TTTAGGTGACAATTTTAATTCTATTAGAGTTGTGGTGGAGTGATTAGTAATTTTTCATCT
TTAATCAAAAGGTTTCGGGCTTGAGTCTCCGGATACGGAGTCGTCTTTGTTAAGGAGCAC
TTTATCCTCAATATGAGACTTTTCGACGTGAATCTAAATTTAATCGGACTTCAATATGTG
TACCGAACACCCGTG
