Microarray Probes on PGSC0003DMT400005621
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_30001_PI426222305 |
JHI_St_60k_v1 |
AAATATCTTCTTTGTAATGGTTACTGTGAGAAGTTTTGAATCCATCTGTACATGCTGGAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400005621
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400005621 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G56750.1 |
+2 |
1e-100 |
316 |
160/215 (74%) |
N-MYC downregulated-like 1 | chr5:22957986-22960606 FORWARD LENGTH=346 |
Transcript Sequence (2153 bp)
>PGSC0003DMT400005621 2153 pgsc_dm_v3.4
TTCCAATGCTTCTTCAAATCAAAGTGAAGAGAAAGAGAGAGAGAGAGAGAGGTTTAGAGA
GAGAAAAAAGAGGGAGTTTTAGAGAGAGAAAGTAAAAGAGAGAGAAGTGCGGCTAATGGG
AGATTCGAGCGACTCCGTTTCGGTGGATATGGAAACAATCTCCGTCGCCGGAAAGGAGCA
CCTTGTAAAAACTGGCCGTGGTTATGTCTCTGTTGCTGTTTTTGGGGACCAGGACAAGCC
GGCTCTTATCACCTATCCCGATTTAGCTTTAAATTATATGTCCTGTTTCCAAGGAGTATT
CTATTGTCCAGAAGCATTTTCATTGCTGCTCCATAACTTCTGTATTTACCACATAAGTCC
TCCTGGTCATGAGTTGGGAGCTGCTGTCATGAGTCTTGATGATCCTGTCTTATCGGTTGA
TGATTTAGCAGACCAGATTGTGGAGGTGCTTGATTACTTCAGGCTTGGTAAAGTAATGTG
TATGGGTGTAACAGCTGGAGCATATATTCTTACTTTGTTTGCGATAAAATACACACAAAG
GGTTATGGGTTTGATACTCGTTTCCCCCTTGTGCAAAGCACCCTCTTGGACAGAATGGTT
GTGTAATAAGGTGATGACAAATCTGCTTTACTTTTGTGGCATGTGTACTTTGGTGAAGGA
GTTACTGCTGTTGCGGTACTTTAGCAAGGAAGTCCGCGGCAGTGTTGAAGTTCCAGAATC
GGATGTAGTTCAAGCATGCCGAAGATTGCTAGGTGAGAGACAGAGTCCAAATGTATTGCG
GTTGCTCGAAGCTATCAATGAGTAAGTCCTTCAGCAAAAAGACATTTCAGGGTATCTCTG
CTGTTTACTTCTCTTCTTCTCCTCATTTCTTCTTGTTTGTTGTGGGGAGCAGTACTTTTC
ACCTTAAGTAGGTGGGTTGGGTCTTGAGTGGTTCTCCCTCTCTCTCAACACTAATAGGAT
GCTGCTCAAAGCTCAGTATAGCATAAGGTTGCTACTACAGTGGCTGTATAGAATTTTAGA
ACAACCATGTATCTGTTAACCTATGATAAACAAAGAAGTCATTCTACCAAGTCTAGCTTT
GGGTGGAGGCCCTATGTTGCTCGGACTCTTCAAAAGTGCCAACGGGTGCGTGTCGGATTC
GCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGGTGCGGCATCAAAAGTGAAGAGTC
CGCGCAGATAGTAAATTTCCTTCTTCTCTAGAGCATTGGAGTTTGACCGAGGGATTTTTC
CATCCATGCCATGGACCTACTTCACTGGTCAGTTCCTTTTTTTGATACTCTTTTTCCTTT
TTTGGTCGATGACCAAGAAATAGGTCTGTGGCCAACCCTTAGGACTAATCGTAGCCTTTA
GAACTAGGGGATAATAGGCTAGCTTCTATCCTTCTTCACTTAAATACCTAACTTAGTTCC
ATGTTTTGATACATATATTGAGTAAATTTGTTTTATTTATCTGACAGGAGACCAGACATA
ACCCAAGGCTTGCGGAAACTAAAATGTCGTTCTTTAATATTTGTTGGAGAGAGCTCTCCT
TTTCATTCCGAGGCTCTCCATATGACATCAAAGTTAGATAGAAGGTTCAGCGCTCTAGTT
GAGGTTCAAGCATGTGGTTCAATGGTGACTGAAGAGCAGCCAGATGCAATGTTGATCCCA
CTGGAATACTTTCTAATGGGATTTGGATTTTATCGACCGTCTCAGTGCAATGTCAGCCCA
AGAAGCCCGTTAAGTCCAACCAGCATCTCTCCGGAGCTTTTCTCGCCAGAAAGTATGGGG
TTGAAGTTAAAACCAATTAAAACCAGATTTTCTGAAGAAGTATGAGTCTGGGCTCAAAGT
TAAAATAAGTTTTTGTAAAATTTGTAAGCATACATTGAAGATCCACTTTGATTGAAGACA
GTTAGGAATGTGAATTTATAGGAGGGAGGGAGGGTTGTAGATAAGAGAGTTGGAAAATAG
AAAGTGGAAGAAAAAACAAAAGGAAAAAAGAGTTTTTTTTTTAAAAATATCTTCTTTGTA
ATGGTTACTGTGAGAAGTTTTGAATCCATCTGTACATGCTGGACAATAAATAATAGTAAT
TTATATTGATAAAAGGAATAAAAATAATAAAAAGGCAGGTGCCAGCCTTTTCC
