Microarray Probes on PGSC0003DMT400003933
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5141_PI426222305 |
JHI_St_60k_v1 |
TCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003933
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003933 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G23920.1 |
+2 |
0.0 |
843 |
417/587 (71%) |
beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575 |
Transcript Sequence (2054 bp)
>PGSC0003DMT400003933 2054 pgsc_dm_v3.4
TAAACCACAATTTTAACTCCACCTTCTCCACATTTTCTCCATCAATTTGGTGAACAAAAA
AAATAAAAAAATCATCATTTTAATCTGAAAAAAAATTAATATTATTATTATGGCAATGAG
TCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGT
TTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGAT
GACGAATTTAAAAGTATCGGTACAAAAAACAGGAGCTGAAATTGACAGGGTGTCGCCGTC
GCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGGCCGGATTTATTAGCGTG
TCAAGCGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAA
TTCGTCGGAGAAAGAGAAAGGAGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAA
AATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAG
CGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCGCC
GGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACT
CAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC
GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATTCAGATCTTGCATACAC
AGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGT
TCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAG
ATTTGAGAATCTCCTAGGTGACACCATTGTGGAAATTCAAGTCGGGATGGGTCCAGCTGG
AGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGG
TGCTTTTCAGTGTTATGACAAGTACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTT
TGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCC
AGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTT
CTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGC
CAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTG
GCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAA
CCGAGATGGTTACCTTCCCATCGCCCAGATGCTTGCCCGCCACGGTGCAGTTTTCAACTT
CACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCCCAATGTGCACCTGAGAA
GTTGGTTAGGCAAGTGGCATTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAA
TGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAA
TATCAACGATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCC
TGACCTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGA
AGGAAAAGACGCTAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCA
TATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCAGCCCTCATGCACTAAGCAAATGGTTG
TCAAATAGTACTGTAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACCA
AGGATCTTATAGCTCGCTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTATT
TTTTTCGAAGTTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACAA
CTCTTGAATCCAGA
