Microarray Probes on PGSC0003DMT400003608
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1174_PI426222305 |
JHI_St_60k_v1 |
CAGATATCTTCATTTCCTAAACTATACCCTCGTTACTCAAGCAAACAGAGAGAAACTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003608
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003608 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088100.2 |
+2 |
4e-156 |
445 |
222/226 (98%) |
genomic_reference:SL2.50ch02 gene_region:44867449-44868915 transcript_region:SL2.50ch02:44867449..44868915- go_terms:GO:0005199 functional_description:Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal |
| TAIR PP10 |
AT1G26770.2 |
+2 |
1e-125 |
368 |
185/226 (82%) |
expansin A10 | chr1:9259775-9260792 FORWARD LENGTH=259 |
Transcript Sequence (1297 bp)
>PGSC0003DMT400003608 1297 pgsc_dm_v3.4
TTATTCTCCACGATTGCAGATATCTTCATTTCCTAAACTATACCCTCGTTACTCAAGCAA
ACAGAGAGAAACTTTTTTTTGTTTGAAAATGGCTCTTTTAGGTCTCCTTTTAATGGGAAT
TTCCCTCATGTTTCAATCAGCCCATGGCAATGGCGGTTGGATCAATGCTCATGCCACTTT
TTACGGTGGAGGAGATGCTTCTGGAACTATGGGTGGTGCTTGTGGTTACGGAAATTTATA
CAGCACTGGATACGGTACGAACACTGCTGCGTTGAGTACTGCTCTGTTCAATAACGGGTT
GAGTTGTGGATCGTGTTTTCAGCTAATGTGTGTGAATGCGGGGCAGTACTGCCTGCCGGG
CATAATTACTGTGACAGCCACAAATTTCTGTCCACCAGGAGGGTGGTGTGATCCTCCGCG
CCCTCATTTTGATCTCTCTCAACCTATCTTCTTGCGCATTGCTCAATATAGAGCTGGCAT
CGTTCCTGTTGCCTACAGAAGAGTACCCTGCAGAAGAAGTGGAGGAATTAGATTTACAAT
CAATGGTCACTCTTACTTCAACTTGGTTCTTGTAACAAATGTTGGAGGTGCAGGAGATGT
ACACTCAGTATACATCAAGGGTTCAAGAACTCAATGGCAACCAATGTCAAGAAATTGGGG
CCAAAATTGGCAGAATAACGCTTACCTTAACGGCCAAAGCCTGTCCTTTAAGGTCACTAC
AGGCGATGGTCGCACTGTTGTTTCATACAATGCAGCTCCTAGTTCTTGGTCTTTTGGTCA
GACATTTTCTGGAGGACAATTCCGTTAGAACGCAAATATTTTGCGAAAAAAAAACCAGAA
TTTTCAAGTATACTATTTACTAAAATATTTAATTTTAAATATTATTCTAAGAGTTTGGCC
TTAATTTGAGGGTTTTACTCACCAAAATGTTTGGGAAAAGCGCAGTTTGGCACTTTTTGT
CCATTGTAAAATTGGTCATTCAATTGTGGAAGTAAAAAGAATTTATTCGGCCTACTTTTT
TTTTGGGTGGCTGTTAACGTCTAGGGGGGCGGCAGTTGTGAGCTTTTACTGCTCAATTTA
ATAGTATAAATAGCATTACAATATTGTGTGCATAGAAGAAAAATATCTACTTTTTTTTTT
TACTGTAAAAGAGCTAAGCACTAATTATGCTGAGTATGTATGTACCAATTGTCTCTAGCT
ATTTGTTTGTAAGAAAATGTTACTATAATAATAAAAGGAAACTCCAAGCTGTACTAGGTG
CAATGTCTTATAACGGGCATTCTTTACCTTACAATTG
