Microarray Probes on PGSC0003DMT400001153
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18876_PI426222305 |
JHI_St_60k_v1 |
GGTATTCATGTTTTTGTTTCATAAGTATACTAGCTGTAAAATGGAGGTCTAGTGGGACTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001153
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001153 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G44820.1 |
+1 |
0.0 |
594 |
339/525 (65%) |
Phototropic-responsive NPH3 family protein | chr3:16361864-16364411 REVERSE LENGTH=651 |
Transcript Sequence (3826 bp)
>PGSC0003DMT400001153 3826 pgsc_dm_v3.4
TTTTTTGATAAATTTAATTTAATCGAATTTTAATATGAATATCGAAATACGAGAGCTGAC
ATTGTAAAAATCAGAAGCGTAGCTCCTCACAGAACCCGAAGCCACATACATTCTCATTGG
ATCCATGTGTTCCTCGATTAAAACCCAAATCGCACTCCACCTGTTCGACAAAAAGCGTCA
ACCAAAACTCAAACCATCATATTCTCTCCCCCTTTCTTCATCATTAGCCATGTCTTCTTG
TCTCCATTTCCTTCTAGTTTGTCCTTCTTCGCCGGCCTTTAAAACCCCTTTGTCTCTTTT
TCCCTTTTTCTACTTCCATTTGTATGATATATAGTGGTATATAGTGAGTATACTTGTACA
TGTAGTGCCGGGTAATGTAAATGTAAAAAAAGATAGTACTAGTCAAAAACCCAAATGAAT
ATTGTAATGGGTTTTTGCTGAAAGGAAGAATCTTTGGTGGAGATTATGCTTAATTGTTTA
AGCCGGTTTTTTGTGGGTTCTCTTTACACATATGCCACAAGTATATAATATATACTGTAT
ATAAAAGTAACGTATTGTATATTATGGACCATACCTGTTGCTTTGCTGTGCTGTTTCATT
AGTTGGGGGTTGTTGTGACCAGTGATTTTTGTTTTCTTTTAGATACACAAGAAGAGAAAA
TGGTGAGGGGCAAGAAGGTTTTTTTTTTTTTTTTTGGTTTTCCATCTAGTGTCCGATAGT
CTATTGGGGCCTGACTACATCGGACGGCAAGTTCCATACCTGTTGCTGTGCTGTTTCCTT
TGTTGGGGTTGTTGTTGTGAGCAGTGAATTCAGTTTTCCTTAGAAACACAAGAAGAGAAA
AGGGTGGGTTTGGGGTGAGGGGGTAAAAAGCCTTTTTTTTTTTTGGGTTTTCCGTCCTGT
GTCCAGTACCCGCATTGGGGTCTGACTAAAAAGTCTTATATTTGAGGTGAGCGTTCGCTA
ACAAAGACACTCGGTATCTAGGAGGACTCGAACCCGAGACCTCCCTTATTGGTATCCCTT
ATTGGTAGGGGGTTAAGAAGCTTAGCTGTAAGAGAAGGGAGGGGGACCAATGATTATGAT
TTTCTTTTTGGTGTCTAATTAATTGAGTGGATTCTTATGACCCCTTAAGCTTTGACTCAT
TTTGGACTTCATTTATGTGGCTCCCATGTTTGGTGATTTTGCTTTTTTCCTTTGATGGGG
GTTTGTTTAACTTGGTAATTAATTGCCAGCATCATATAGGTTCAGATGCTTTCAATTGAA
TTCAGTAGAATTTGTGTCGGAGGAAAAAGGTGTGTAAGTTGTGTTGGAGAAAATACAAAT
TGAGTGTAGGGGTGAGAAACAAAGTTGTTGTGTTCTGGAGTTTGGATCATTGATGGCACC
GGCTGCGAAGGTTACTGGATTCTACCGTGAGGGAAATGACTGGTTTTGCAATGCAAGTTT
GGTCAGTGATTTTACCTTGGTTGTGGACGGAGTAAACTTCCACCTTCACAAGTTTCCACT
TATGTCGAGATGTGGAAGGATTGACAAAATACTAGGAGCAGCTCAAGGTCCACATGAAGG
GACTTTCCTGACAACTTTAGAAGACTTCCCTGGTGGGAGTGACATATTTTTAGTCACAAT
TACTTGGAGATGACGGAGGACTATGGTGAAGATAATTTACTGTTTAAGGCAGATGCTTAC
TTTCATAAGAATATTCTGAAGAATTGGAAAGATTGCATATTAACTCTCCAAAGTTGTGAT
TCTGTCATACCAAGAGCAGACAAGCTAGAGATCATTAGTAAATGCTCGCATGCTCTCTCT
GTGATGGTCTGCACAGATCCTAGTTTATTTGGATGGCCTATGTTGTTGTATGGCTGTTTA
CAGAGCCCTGGAGGTAGTATATTGTGGAATGGAATTAACACCGGTGCTAGAATCCAAACC
ATTGAATCTGACTGGTGGTTCGAAGACATCTCATATCTTTCTGTGCCATTATTTCAGAGA
TTAATTCGAACAATGGAAGCCAGAGGTATTAGACATGAAAATTTAGCAGGTGCTATGATG
TACTACTGTAGGAAGTACCTTCCAGGACTTGGCCGGTGGCAGAGTGGGCAAATTGGTAAA
ACTAGAACAGTTGCTAGTTTCAGTATGACACCAGCTGCTGTCGATCAGAAAGTTCTTCTT
GAAAGTGTTGCGAAACAGCTTCCTGAATTGAAGGGCAAATCTTTTTGCCGTTTCTTGTTG
GGACTTCTGCGAGTTGCCTTGATACTTGGTGTGCACCACACATGCCTGGACTCGTTGGAG
AGGAGAGCAGGAATGCAGTTGGACCTAGCATCCCTAGATGGTTTGCTGATACCTTCCTAC
TCAGATTCTGATACATTATATAACACCGACTGTGTTGAACGAATGATTCATCATTTTATA
TCTTCTGAATCTGGGATCACTGCAATACCTGATCCATCTTCATTTGAGATAGGAACATCA
CCATCATCCCATCCTTTAAGGAGAGTGGCGAAGTTGGTTGACAGCTATATTGCAGAAGTT
GCATCTGATGTGAACCTAAAGCCGGGAAAAGTACGTTCACTTGCTGAAGCTCTCCCAGAA
TCTTCAAGATCTCTGCATGATGGGCTATATAGAGCTCTAGATATATACTTCAAGGCGCAT
CCTTGGCTTTCAGCAAAAGAGAAGGAGCAGCTTTGCAACATCATCGACTTTCAGAAGCTC
TCTATTGATGCTTGCGCCCATGCATCCCAGAATGACAGATTGCCTCTTCGAGTTGTTCTC
CAAGTTCTTTTCTTCGAGCAATTGCAGCTGAGAACAGCTTTAGCTGGTTGCTTCCAAGTC
TTGGATACAGAAAGTGGCCCTGCAGCTCCTGTCACTGGCCCTAGTGACATGGCAGGTCAA
ATTGTACAAAGAGACGGATGGGTGACAGTCGTGCGTGAGAACCAGGGTCTAAAGGTGGAC
TTGGAAAGAATGAAATCTAGGGTTGGTGAACTTGAAGAAGAATTCAGCAAAATCAAACAA
GAGATGAGAAAGGTCACAAAGTCACATAGTTACCTCAGTTCTCCGCGCTTTCTTGCCCGA
AGGATTGGATGCAAGCTCCTTCCCCAATCCTCAGATACTCAACCAGATGTGGTTGAAAGC
ACAGGTCCAACCCCAAGATCATCAGTTGAGCAACCGAGAAGCTCAAGACACCATAAAAGC
TCCTCTTTGATTTCATGACGAGAAGACTCAGGTTTGATGTCTATTCCCCCTGGAGAATGC
CATTTATAAATATTTACCCTCCACACCAGAATTCTCGCACTACATGTTTGGAATAGATTC
ATCCCTTGATAATTCAGGGCACCTATATATCCCTTTGAGAAACCATTTCGAATTCATTTC
ATAAGATACAACTGTCCTGCTTGGCTGGCTGAGTATATTTAGTATGTTGGTTGGACAACA
ACAACAAAACGAAAATACTTATCCATCGGAACAATGGACTCCTGATGGAAGAAGATGAGA
AGAAACTAAATTTATGGTTCAATCTCATGTATCTTGACACAAACATAGAATTCAGCTGAT
ACTAGTAAAATCTGTTCCTTTCCTAGGAGCAATATAATGGGACTCTGTTGTCCACATTTC
TCTCTTATACATGTACAGCTTCATGAAGAGTTTGTAAAGCTATATGATGAAGGTATTCAT
GTTTTTGTTTCATAAGTATACTAGCTGTAAAATGGAGGTCTAGTGGGACTAATTATATCT
TTAGAAGAATTATGCATAAAGCTCTACATTCATCATTTTCAATTTGTTTGAAATTCTTAT
AATTGTTTGTACCAATTGGTTACATTTCAAGTTTGTTGTATTTTCA
