Microarray Probes on PGSC0003DMT400083263
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31966_PI426222305 |
JHI_St_60k_v1 |
GTTGAAGGTGATTTTTCAGATCCTTGTATAGTCAAAAAGGAAAAGCAAGTCATCAGCAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400083263
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400083263 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G55365.1 |
+1 |
3e-12 |
63 |
25/62 (40%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20673983-20674363 REVERSE LENGTH=126 |
Transcript Sequence (839 bp)
>PGSC0003DMT400083263 839 pgsc_dm_v3.4
AAAAGACTATTTATTCCACCTGGTGACCCCTTCTCCCACTTTTAGACCAGACAACATTCT
GTTTGGCAGAAAAGTGAAAAAGAAGTGTGAAGAGAAGAATTCAAAGAAAGCAGAAGAAAT
ATGACATTCAATGGGGTATTGGTGGTGTCAGTGGCAAAAGTTTCAGCAGAGATTTGGCAG
CTGCTGGCATGTTTGCCAGAAACAGTAAGCAGTCAGCAACTGTTGGATCTTGTTATCTGT
TATCCTTTTCAACAGATTGGTCGTTTAGCTCTTTGCTTCTGCACTTTCCTCTGTTACCCT
CATAATCTCTATTCCTACCGAAGTTATTCTCATACTACTCCTACCTCATCATCATATCAT
CAAGATTCTTCTGTTTCTTCTTCATCATCTTCTTCGCGTTTGGGACAGAATTGGGTTGAT
TTCGACCTGATAGTCTGATCTCCCTGTAAAGTAACTTCTTTTAAGCATTTGGTTACAAGT
ACTTAACCATCTACAGGAGTTCTAGTTTTATCTAAATGTAAATTGTCCATTTGATTTGAA
CATTTTCCTTTCTTTTCCTCCCCCTTCAAGATGTGGTTGATTCAGTTGTCTGTTCATCAG
TAATGGTTTTGGTGAAATCACTTCTGATTCCATAGCAACTGATGTTGGATCCTTTAGGAT
GATGATACTATTTGGATCATGGGTTTTCCAAGATGTTATTGAGCTTTCCTTGTTATTTTC
TACTGATAAAAGTCCATATTTTAATGGTTCTTGAGCTAGAGTTGAAGGTGATTTTTCAGA
TCCTTGTATAGTCAAAAAGGAAAAGCAAGTCATCAGCAATATTTTTATGGTATGCAGAT
