Microarray Probes on PGSC0003DMT400065220
Probe ID | Chip | Probe Sequence |
---|
CUST_50143_PI426222305 |
JHI_St_60k_v1 |
GGGTTTACGTTTCTCAAAAATATCAGTCAAGTAAAATCGATTAAGCTTCGTGACTAGTCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400065220
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400065220 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G49970.1 |
+2 |
3e-135 |
408 |
244/364 (67%) |
CLP protease proteolytic subunit 1 | chr1:18501936-18504462 REVERSE LENGTH=387 |
Transcript Sequence (2225 bp)
>PGSC0003DMT400065220 2225 pgsc_dm_v3.4
TACAACACCAGATGAATTGGGCGTCATGTCATCCAATCCGGCCCATTAGCATGTAGTGAT
GCAGTTTAATTCCCATCCACACTTAACATTAGTTCTTCTTCCTCACAAGGAAGTATAAAC
ACCAGAAGTGAGTTTTGAAGAGGAAAAAGTGTCCATGGCTTCTTCCTTACTTCTCTCTCC
TCTTTCTCTTGCTAATAATCGCGAACTGGACTCTCGTATTGTACTCCATAAATCAACTTT
CCTTCCCATCCCCAATTTCTTCTTTTCAGCATCTCTTCATCTTCATAGTCGCAGCAGACC
GAACGCCGGCGTTCGAGGCTATTCTTACAGGTCTCCAGTAGCCCAGTCTTTCGACCATAT
ACCCACACAGTTCAGACAAGAAAATCTCAAAGATGGACTACTGAACAACTATAAGAATGC
CCCTCAGTATCTTTACGGCCTTTCTCCGTCACAGATGGATATGTTCATGACAGAAGATAA
CCCAGCCCGGCGACAGTCAGGAAGTGTCACTGAAGAGAGTATAGCTTCATCCCATAACTA
TCTTAAAAATGGTGGAATGTGGAGTATGCCAGGCATGAATAAATGGGGCCCTTCAACATG
CAGCATGAGCGTCAGCATGTACGGAGGAGGAGGAGGAGGAGCAAGATCTGATAGACCCCC
AACTGCGCCTCCTGATTTGCCATCTTTGCTTTTAGATGCTAGAATTGTCTATCTGGGCAT
GCCTATTGTAGAAGCTGTTACAGAGCTTATTGTTGCACAGTTTATGTGGTTGGATTTCGA
CAATCCAACAAAGCCCGTATACCTATATATAAATTCATCTGGTACCCAGAATGAGGAAAT
GGAGACTGTCGGTTCTGAAACAGAGGCATATGCCATTGCTGACATGATAGGATACTGCAA
ATCAGATGTATATACAGTAAACTGTGGCATGGCTTTTGGTCAAGCAGCAATGCTTCTGTC
ACAAGGAAAGAAAGGGTTCCGTGCTATGCAGCCACATTCATCTACCAAATTGTATTTACC
TAAGGTCAGCAAATCCAGTGGAGCACCGATAGAGATGTGGATAAAGGCCAAAGAACTAGA
ATCAAACTCAGAGTATTACCTTGAACTATTATCACAAGGAACTGGAAAACCAAAGGAAGA
AATTAAGAAAGATATCCTACGCCCTAAATATTTCAGGGCACTAGAGGCCATTGACTATGG
CCTTGCAGATAAGATTATTAGTTCAAGTGACGATGCATTTGACAAACGGAACTATGAAGA
GATGCTCCTCCAATCTAGAGCTATGTCGAGACCAGGTGGACCAGGTGCTCAAGCTGCTCC
CTCCGGGTTCAGGTGAATGAAAGAGTGATAATGGTCCTGAACTTTCCGAAACAACTGATG
TTCCTGTCTAGTTCTGAGGAACAAAGTGGCCGGTTACTTGTCTGTGCACCCATGGAATAA
AACTGGGTATATGATTTTACGACTATTGTTTACAGGTTTGTGAAAAGTTCTTACAATGCC
AATTGTGTGTACCAGTATAGAATCAGATAGTGATAGTGCATGGTATAAATGAATTTAAAG
TTGTCATTTTTCTTCATCTTGTATCAGATCATTTGTGGTCGATTATCGTATTCGTAGCTT
GAAAGTTGCCAATGGTAAATGGTATCTGGATTCAAAAGGGAGGAAGTGAAGCTTCAAGTT
GACACATTTGACAATATAAAGGTAAGCGGAGAAAGGAAGGTAGGCGAATATAAATTTATT
CGCTTTCAAAAATCAACGAAAGCACCTGAAAAATCGAAATCTGAGGATACCAGTGCAAAG
CTTGAAGACGGGATTTTGTTTGTGATCATCCCAAAAGAATTACCAGTAAACAATGAACGC
GACGAGGCAGCAATTGCTAGCTCTGGTCATGAAGAGAATCAACAAGAGGAAATTGAAAGT
TCGAAAGGTCATGATACAGAGGAAAAAGAAAATCATAAAGAGGGATTGAGTGGGGACGAA
GAATTTCATGATGCAAAAATGGCGAAAAAGTGGCATGAGGTTTATCTAGTGGCAGCAGGA
AAAGAAATTCTGAAGAACAACAAAACAATTGTAATTACAGCATTGCTAGCATTTTCTTTC
GGGGTTTACGTTTCTCAAAAATATCAGTCAAGTAAAATCGATTAAGCTTCGTGACTAGTC
ATTCTCTAATAATCCAATTACTTATGTACATAACATATTCAACGTGCAATGAACATCAAG
TGAAC