Microarray Probes on PGSC0003DMT400055050
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18290_PI426222305 |
JHI_St_60k_v1 |
CTAAGGAAAGAGCTAGAGAAATTCTCAAATTTCATGCTAAGGCATGGAGTAATTCTCCTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055050
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055050 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52450.1 |
+3 |
5e-161 |
464 |
234/431 (54%) |
plant U-box 22 | chr3:19440943-19442250 REVERSE LENGTH=435 |
Transcript Sequence (1229 bp)
>PGSC0003DMT400055050 1229 pgsc_dm_v3.4
AAGAAATTCAAGTACCTTCTTATTTTATTTGCCCCATTTCACTTGAGATGATGAAAGATC
CTGTTACGATCTCTACAGGAATAACATATGATCGAGAAAACATTGAAAAATGGGTATTCT
CTGAAAAGAACAACACTTGTCCGGCTACGAAACAGTCTCTTACATGCATAGAGTTGACCC
CAAATGTTACTCTTCGACGATTAATCCAATCGTGGTGTACTATCAATGCGTCTCATGGTA
TTGAAAGGTTCCCTACACCAAAGCCTCCGGTAAGCAAACCACAAATCATAAAGCTCCTAA
AAGAAGCGAAATCGCCTAAATTGCAAATGAAATCTCTCAAGAGACTCAGATCCATAGCTT
CTGAGAATGATGCTAACAAACATTGCATGGAATCTGCTGGGGCAATGGAGTTTTTAGCTT
CTATTATTAATAATAATAATTCGAATGAAGTGTTTGAAGAAGAAGAAGAGGGTTTCATGA
GTACTAAAGACGAAGCGCTTAGCATCCTCTATCAACTCAAATTATCCGAACAAGGATTGA
AGTCACTCATCATGAGTGGAAATGGAGAATTCATTGAGTCATTGACACGTGTCATGCAAC
ATGGGAGCTATGAGTCTAGGGCTTACGCGGTTATGCTAATGAAAGACATGTTTGAAGTAT
CCACACCAACTTTACTTTTGAGTTTGAAACAAGAATTCTTCACACAAGTTGTTCAAGTCT
TGAGGGATGAGATCTCTCAAAAGGCTACAAAAGCATCATTGCAAGTGCTAGTGCACGCGT
GTCCATTTGGTAGGAACAGAGTGAAAGCAGCAGAAGCAGGAGCAATTAGGGTTTTGGTTG
ATCTTCTGCTCGATTCATCTGAGAAAAGGGTTTGTGAATTGATGCTAATTTTACTAGATC
AACTTTGTCTGAGCGCAGAAGGGAGAGCTGAGCTATTGAATCATCCTGGAGGATTAGCCA
TTGTGTCCAAGAAAATACTTAGGGTTTCAAAAGTAGGGAGTGAAAGGGCAATCAAGATCT
TACATTCAATCTCAAAGTTTTCATCAACACCAAGTGTTGTTCAAGAGATGTTGAGTTTGG
GTGTGGTGGCAAAGCTTTGTTTGGTGCTTCAAGTTGATTGTGGAAGTAAATCTAAGGAAA
GAGCTAGAGAAATTCTCAAATTTCATGCTAAGGCATGGAGTAATTCTCCTTGTATACCTA
ATAATTTACTATCTTCATATCCATTTTAG
