Microarray Probes on PGSC0003DMT400050242
Probe ID | Chip | Probe Sequence |
---|
CUST_45828_PI426222305 |
JHI_St_60k_v1 |
CAAAAAGCAGTAAATGTGGCTGAAACTGTGCATAAGGCAAAACAAAGATGAATTTTTCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400050242
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400050242 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G26850.1 |
+3 |
0.0 |
955 |
446/615 (73%) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616 |
Transcript Sequence (5102 bp)
>PGSC0003DMT400050242 5102 pgsc_dm_v3.4
GTCAGAGTCTAGTAAAAACTGAGGCCACCAACTTCCAGTTCATTGAAAACATCGGATTTG
TCTTTGTCAAGTAATGTCCGATGTCGTATACTCCAAACAACCGAACCGACTACTGTAAAT
TCCGATCAAACACTTACTTTGGATTCTTTTGAATAAATATACATCGAACAATGGTTTGAT
CCTATTGGAAACGCAGCAAGACTCCTCTTTCCTGAGATCCGTCAATCATGGCGATAAAAG
GAAATCCAGGAGATAACAGAAGCAGAGGCCCTGCGTCAATATTTATTGTAGCTGGTCTTT
GTTGTTTTTTCTATCTTATAGGAGTCTGGCAAAGAGGTGGTTTCGTGAAGGGGGACAGCA
AAGCTCTTCAGATAACAAAAAGGGCAGAGGACTGCAGCATTCTCTCCAATCTAGAGTATG
AAACTCATCACGGCGATCAACACGGTCTGGTTGATGATCCCAAACTGAAAATCAAGCAGT
TTGAACCTTGTGGTGAGCAATATGTTGATTATACACCGTGTCATGATCAAATGCGAGCAA
TGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGAAGAAGAGA
AGCTGCATTGTCTTATTCCAGCGCCAAAAGGCTATATAACTCCTTTTCCATGGCCGAAGA
GTCGTGACTATGTACCTTATGCAAATGCACCACATAAAAGTTTAACAGTTGAGAAGGCAG
TGCAAAACTGGGTACAGCATGAAGGTGATATACTTAGATTTCCAGGTGGTGGAACTCAGT
TCCCACATGGGGCAGATGTGTATATTGACCAGCTTGCTTCTGTGATACCAATTGGAAATG
GCACAGTTCGAACAGCATTGGATACGGGATGTGGGGTTGCTAGTTGGGGTGCATACCTTT
TTAAGAAAAACGTTATAGCCATGTCATTCGCACCAAGAGACTCACATGAAGCTCAAGTCC
AATTTGCTTTGGAAAGAGGCGTACCAGCAGTTATTGGTGTACTTGGAACCATAAAATTGC
CATTTCCATCAAGGGCCTTTGATATGGCTCATTGTTCACGTTGTTTGATTCCATGGACTG
CAAACCGTGGACTGTACATGATGGAAGTGGATCGAGTTCTCAGACCAGGGGGGTATTGGA
TACTTTCAGGTCCTCCCATCAGCTGGCAGACTAATTATAAGGCTTGGCAACTACCTAAAG
AGGAGCTGGAGGAGGAACAAAGAATGATTGAAGAGATAGCTAAGCTTCTCTGCTGGGAAA
AGAAGTACGAGAAAGGTGAGATAGCTATATGGAGAAAACGTGTTAACTCCGAGTACTGCA
GTGAACGAGATTCCCGTGTAACTCTATGTGACCTCTCGAATTCAGAAAATGTCTGGTATA
AGAAGATGGAGGCATGTGTAACTCCGTATCCTGAAACAATCAATTCGGAGCAAGTTTCTG
GTGGAGAGCTCAAGCCATTTCCGGAGAGACTTAATGCTATTCCTCCAAGAATAGCAAGTG
GATCTCTTACTGGAGTCTCTGTTGAATCATTCCAGGAGGACAACAAGTCATGGAAGAAGC
ATGTGAAAGCTTATAAGAGAGTTAACAAGCTCCTTGACACTAGGAGGTATCGCAGTGTAC
TGGATATGAATGCTGGCCTAGGAAGTTTTGCTGCAGCTCTAGAATCATCTAAGCTATGGG
TCATGAATGTTGTGCCAACTATAGCTGAAAGGGACACTCTTGCTGTAATATATGATCGAG
GCCTGATTGGCATATACCATGACTGGTGTGAAGCCTTCTCTACCTACCCTCGGACATATG
ACTTTATTCATGCAAATGGGATCTTCAGCTTATACAAGGACAAATGTAATACCGAAGACA
TTCTACTAGAGATGGACAGGATTCTTAGACCAGAAGGCGCAGTTATTTTCCGAGATGATG
CAGATATTCTTGGCCGAGTAAAAAGAATTGTATCTGGTATGAGGTGGAAAACAAAAATGG
TAGATCATGAGGATGGTCCTCTTATCTCTAAAAAGGTATTGTTTGCTGTCAAAAGATACT
GGGTTGTTGGAGATAACAACTCAACCATCTTACGGTGAATGGTATGACAAAGCAGCTTAT
TTGGCAGATAGTTAGCTATCTGGTTCTTGGCCAGAGTTAGTATTATTCTTTTCCTGCGGG
AGTTCAGAGTAGACAACAACAAGCAGCGATCTTTGCTGTTTCTCATGGTATCTTTTTTTA
TTCTTCTTACTTAGAGGTTGCAGGTAAGAAAAGTTTTTAGATCTCTTATGCCTCATTGGA
TGTCTATTAAAGGGCTTCATTTTGATCTCCTTGTGTAGTATTGTTATCATCACTAAATTC
TTTTCTTGTTTTGCTATATACCATGAATTATAACAGTTCATAAATTCCAGCTGAGCAGAA
TGAGTTATGGTTGGGGATCTGCTTACTTTCTAATGTCCTATTCTACGGGAATATCTTAAC
TAATTGAAGCAGTTTATTACAGAACTAGACGTGGTCATAGCACAACATCTAGGAAAACAC
TGAAATTAGCTGATTACAAAATGGAGGTTTATAGGAAGATGGTATTTAGTAAATGTAATC
ACACCCTGGCAGATTACTCTCATTGTTGAAACAGTTGACTTTAGCCAAATGATTTTCTGA
ATAAGATTTAATTTAGATTTTTTATATAATACTCCAAATATCTTAATGAAATCTGGTAGC
TTTTCAAGTCTATGAGTGTTTCACTAACTGAAAGAAGTGGAACTCAACAAATAGCTCTAG
ATATGCAACCGTCTCTCCATTTTGTGTTGCTGTACTTGGTAATCCAACTAGTCATGTACC
TGACAAGATCTCCAAAATCAGTCTGTAAAATTGAAACGTCTAACCATCTGCGGGGCAGGC
AAATCATTCAATACTGAATTTTGTAAAGGCATCGAAATTCATTATGGTGTGGATCGTGTT
ATCTTGAGTCCCTACCTTTTGGGGGCTCACTTGGATGAGTGGTGGACCTTTGTCTTTGTT
TTTGAGTTTTCTATTGAACCTCTTGTTATCTGATGCCTAGCTATCCTCATAAGCCGTTGC
ATTTATTCTATGTAATTAATATGTATTCTTCATGTGGATGTATTGACTGTCAAAAACTGC
TAACTGTTAGGTATAGAATGGAAGATCTATTTAGTTGAAAGAACATCTGAGGTACTGTAA
AGTCTCTGTGATTTATCGTGTTAGATTTGGTGAGAGATTACAAGGCTGTCAATATTAGGC
TTCTCTAAACACGTAGGATCCACCACCTTAAAGCTAAAGGACCCCCCATCCCCACCCCCA
CCCCCAACAAAACACAAAACCTCTGCACTGTTCCCTTGTGATTCCATGAAAAGCCAATAT
TATAAAGGAGTGCATAAAGAACCTACAGAAAACAAAACTTCTTCAATCAAAATTTCATCT
TTTTGACATAAGCCTCCCTTCTGATATTTTGACACCTTTGTGTATGTTGCTTACCTGCTT
TCCATGAATCCTTTTGATTGATACCTTTGAAGATATTAATACAAACAACTCCTCTCGAAC
TATAGTTTCTTATAGTTCAAAATTTCTTTAACTCTCCAGAAGTAAAAATCATATTTGTTT
CCATGTCAGCCGATGATAATGCAACCGGTCTTCGTGTTGCATCATTTTCCTGTTACCTCA
GCAACCCTGAAGAGAGCTTTGTACACAAACTTCATGGGGTTGCAGTTGAGCCTGCTTTTA
GTTCACCCCCCGAGACACCATTTTCTGTTACTAAAGTAAATGCTGCCAAGGTAGCTACTG
CAAAGCCATCCTTAAACAGCACCAGAGATAACCTTGCCAATCTTCGTGTGGAGTCTTTCT
CTTCTTATCTCAAAACCGGGGAAGACAACTTTGCGTTTAAGGCTTCAGGAGCTCCAGTTC
GAGATCCTACTATTTCTTTTGTATTTCCTCAACAGCCTCCGTTTCATAATGCAAAGCAAC
TGGAACAAATCAAGTCCAAAGACGGGGAGATTAGCATATTTGGTGCTGACAAGTACTTCA
ACATGCAACTGGATTATGGAGCTGCCTCTCCAGCTGGGGTGAGGTACAGGGGGAGACTAA
ATGAAGGAACAGTAGATGTGCCCCATGTGAAGCAGAATTCCCAGTCAGGAACTCCTAGCA
TTTGTTCTGAGTCAAGCAGCTGGAATAGCCAAAATGTCCTGTTACAGAATCTTCGGCGAA
CTGTAGTGTATCCGACAAAGCAGAAGAAGATGACAAGAATGAGATTTTTGCCTACTTTCA
GCTGTCAAGGCCCTTGTTTGGACAAGAAAGCAGTCTATGTGAATGAGAGTATAGTACTTG
GATTTTCCCAGCCAGGATCAAAGCATGGATTAAGAAGTCCTTTTGCCTTGAGTTCTGGCT
CTTGTGGAACAGAGGTTCAAACACACTGGGATGATCATAATCTAAGCATTGAAGACCAAA
GAAAGTCACTGGAAGTGTTTGGGTCTGGCAAAATGGGAAAAGGAGATATAGCAGTGAACT
TAGAGAGGAAACTATCTATGTTAACCTGGGACGCCATTCCCAAGGTCCAAAACCTCCCTA
CAACCACCAATGGAAGCAGCACGGCCTGTGATGACATGGCTAGTGATGCTAGCTCTGATT
TATTTGAAATTGAGAATATATCCAGCAGTGAATATGGACTTGAGAATACACAAACATTAG
GTGATTATAGCAGCTGTATCTCTCCAACAACTCAGTATGATGCACCAAGTGAGGCCAGCA
TTGAGTGGAGCGTTGTCACAGCCAGTGCTGCTGATTACTTGTCGGTTATCTCAGATTATG
ATGAGAAGAACTTTGGCTTTGGTGGTTACACATATTCAAGAAACACAGCCAATAAAACCA
CCAAAACCAAGAACCCTGCAGGCAAAGAGGTGCAAAAAACTTACCCCAGTACTGGGCTTT
TAGGTTGCAAGACCCAAAAAGCAGTAAATGTGGCTGAAACTGTGCATAAGGCAAAACAAA
GATGAATTTTTCAGTAAAATTGTGAGAATAATATTTTCTTATTATAAAAAAAGCTGTACT
TTGTACAATCATAGCTTAATCACTATCTTCTTGTCTTCAATAAAAGAAAAGGTTTGTATT
AT