Microarray Probes on PGSC0003DMT400037083
Probe ID | Chip | Probe Sequence |
---|
CUST_26466_PI426222305 |
JHI_St_60k_v1 |
AACAAAATTAACCAAGACATCATGGAGGCACAATTGCACCGTCCACAGGATACAGGGTTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037083
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400037083 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G52300.1 |
+1 |
7e-43 |
165 |
134/370 (36%) |
CAP160 protein | chr5:21237205-21239404 FORWARD LENGTH=619 |
Transcript Sequence (2480 bp)
>PGSC0003DMT400037083 2480 pgsc_dm_v3.4
AAAATTCAAAAAACAATTATCTTCATTTTCTTCCTTCTGAAAACTACTATTGTACAGTGT
ACACATTTCTTTCGAAACCCAAAAAAAATAAATAACAAAATTAACCAAGACATCATGGAG
GCACAATTGCACCGTCCACAGGATACAGGGTTGCACTCAGGGGAAGAACATGGTCAAGTT
CATGATGAAGGTGAACATCATCATAAGCAATCAGTGTTGAAGAAAGTGAAGGCAAAGGCA
AAAAAGATCAAGGATCATCTAAAACATGGTCTTGGACACGAGCATGGCCATGAACACGAG
CACGAGCAGCATTCACTCCAAGGCGACGAAGAAGAAAATGATGATGAAGAAATGGAGGAA
GGTGCAGAAGTTCATGGTGGACCATATGCTATTAGGAGTAAAGATATTCCAAAAGAGGAA
GTTGTGCCAATGGGCAATTTAGAGAATCCAACTAGCCCAAAGGAGGATCGTTATGATTCT
AAGATGAAGAATGAAGATGTGCATAGGCCAATTTTGCAGAGGCAAGACGAATTTGCGAGG
CCACCCTCTTTGGAGGGGACTCACTTCCCCGAAGAAAGGCATAAACCTGTTTTTACTGAG
ACGACCAAGGGCATTGATGATGATCATGTTACTGCCCTTGGAAAACATGAACATCAAGGA
CATGAAAATACTGGAGCACCAATGGGCCTAACGGATCATCATGCTGCCCACAGACCAGTT
ACTGCTGCCGAAACTCGCGAAACTAAGGGCTTTGATCATCATGTTACTGCCCCTGGAGCA
CAAGGTCATCAAGGACTGCAGGGGCATGAAAATATTATTGGAGCACCAACAGGCGTAGTG
GATCATCATGCTGCTGCCGCCCACAGACCAATTACTACTGCTGCGGAAACTCATGAGACT
AAGGGCTTTGATCATCATGTTACTGCTCCAGGAGCACAAGGCCATCAAGGACTTCAGGGG
ACTGAAAATATTATTGGAGCACCAATAGGTTTGGCGAATCCTCACGCTTCCCATTTACAT
GAACAGATGCATAGGCCACCTGTTGTTACCGATACAGGAGCCCGTGGCCGTGGGGAACTA
AATGATCAAGGACTGCAGGGGCACAAATTTAAAGTACTAACAGGTTTAGAGGAGGATCCT
AACGTTCCTAAAGACTATCCAAATCCGACAAACTATCAAAGCAAAGTCACCGATCCAACA
GGCGCCAACAATGAGGAGGCAGGTGTTAGTCCACTTGTTCAATCATTCGAAAAAATGGGA
GTGAACGATGTTCCGGAAACAACACGAATAAGAACAGAGCCAAAAGCAGGGGATTTTCAA
TTTGATCAAGGAACAGAACATAGCCAGTATACAGGATCACATGATCAATTTGCTCCGCAA
GAATCGCCTACAGTTTTCCCCTCAGTTCGTGAAAATACTGAATCAATTCCTAAGAGTATC
AATCCAAGCAATCCAGAGGATTTACCTCAGGACACACTAACTGGGAAACCAGGTAGCTAT
ACAGAAAAGCTTTCATCCGCAACATCAGCAATTGCTGATAAGGCGGTTGCTGCTAAGAAC
ATTGTCGCCTCCAAACTCGGGTATGGTGGAACAGAGGAGGAAACTCAGGCAACAGCAGGC
GATAAAGATGCAACAAAAACAACCTCAGCAACTGAATTTGCACAAAAAGCTGCAAGCGCA
GTTGCAGGAAAACTTGCTCCGGTTTATGAGAAAGTAGCAGTTGCTGGTAGCACAGTCGTG
ACGAAAGTTACAGGACATGAAAACAGGGGAGGTGTTGATGCAGAGCATGAAGTGAAGACT
GATAAAGGGGTGTCAATGACGGAGTATTTAGCAGAGAAGTTTAAGCCTGGAGAGGAAGAC
AGAGCACTTTCTGAAGTGATTTCAGGTTCACTTTCAAGACAGAAGGAGAAAACAGAGGAA
ACAGGGGAGGCAAAGCCAATGGGGAAGGTGACCGAATCAGTGGAAGTTGAAAGGCGATTA
GGTCCTATTGAATCCACAAAGAAAGAAGAAGAAGTTGGTGCTTCTGGAGAAACAAAAGTT
GGTGAAAATTTCGGACAGGGGGTGATGGATAGGGTTAAAGGTGCTGTAAGTACATGGCTT
GGGAAAGGTGTTGAAGCACAGGCAAATGATTCTGCTACGGGTGGAGGCGCTGTTGTTGGG
GGGAGGGGTTGAATGATCAAACCATGTTTTGCTAAATCTTCAGCAACCAAGCAATTGAAG
TTGTTACAACGATTTCTTTTACTTATATATATGCGTTTTCGCCTAATTTTCTTGTTGTTT
TGTTTATGGGAAAAGTGATCAGGATGCTGATGATTTCTAGGAAAGTTATACTTTGAATAT
TATGTATGTTGTTTTGTAAGTGTTCCACTGAAGTGTGTACTCATATTACATGTAACTTTT
TCTGTATCTATTGGTGGTGTATTCCTCAAAGGCCAACGTTGTTAGATTTGTATTGAGTCC
GTCCCTTCAAATTTTTTTCT