Microarray Probes on PGSC0003DMT400031147
Probe ID | Chip | Probe Sequence |
---|
CUST_31842_PI426222305 |
JHI_St_60k_v1 |
CAGCTTCTCATGCTTTCATCGTCAATATAGGCGATCAAATTCAGGTTAATACATCTTATT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400031147
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400031147 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G05600.1 |
+3 |
5e-100 |
211 |
101/168 (60%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371 |
Transcript Sequence (1178 bp)
>PGSC0003DMT400031147 1178 pgsc_dm_v3.4
GTTGTTGTATATATATTTATTTTTGTAGAAAATCCAGCGGCAAGTTGCCCCTTCGTATTC
TCGTCGTATCCTCTGTAAATTTCTGTGAATACAGAGAGATTTGTTTAGATGTTGTGGGGT
AGAGAAGGAATGTTTTGCATATTATAAGGTAAATGATATTTTTTGTTATTGTTGAAATAA
AGAGTAAATTAAGTTAGCAAATAATGAAATCCCCACGAGATAATTGGCCAGAACCAATAG
TTCGTGTCCAATCTTTATCTGATAGTGGGATTTCAACAATTCCAACAAAATATGTGAAGC
CACTAAATGAGAGGCCATCATTAAGTAAGTTTAGTGATGTTAATATTCCAACGATTGATC
TTGAGGGAAGCAGTAATTGTGAAGAAATTTCAGAAGCGTGTCGAGATTGGGGATTTTTTC
AGGTTGTTAATCATGGCGTTCCGCGAGAGCTCATGGATGAAGCGCGACAAGTTTGGAGAG
AGTTTTTTCATCAGCCGATGGATGTTAAGCAAAGTTATGGAAATACGCCTAAGACTTATG
AGGGATATGGAAGTCGACTTGGAGTTGAGAAAGGTGCTATTCTTGATTGGAGTGATTATT
ATTTTCTTCACTATCTTCCTGGATATTTGAAGGACCATAACAAATGGCCTGCCCTCCCTC
TTTCCCTAAGGTATGTTACTTTTCTTTTTTCATACTTTGATACTATATATATATCTCATC
TAAAAATTTAAGTTGTATGCATGCAGGAAAGTGATGGAAGAATATTCAAAACAAGTGGTG
AATTTTGGTGGACGTTTAATGAAGATATTCTCAAAAAATCTTGGATTAAAAGAAGATGTT
TTACAAAATGCATTTGGTGGTGAAGATATAGGAGCATGTCTAAGGGTAAACTTTTATCCA
AAATGTCCACAACCAGACTTGACCTTAGGCCTTTCTCCACATTCGGATCCTGGTGGCATG
ACCATTCTCCTCCCGGACCACCATGTCGCTGGCCTTCAGGTCCGACGCAACAACGCTCAT
TGGATCACTGTAAAACCAGCTTCTCATGCTTTCATCGTCAATATAGGCGATCAAATTCAG
GTTAATACATCTTATTTTTAGTACCACAACATATATTTTGACGAAATTAATTTTCTTAAT
ACAGTACTAAAGATAAATATAATAATGCATGTATATCG