Microarray Probes on PGSC0003DMT400026205

Probe IDChipProbe Sequence
CUST_992_PI426222305 JHI_St_60k_v1 CTGTTTGTAATCTTCTTCACACTGTTGTCTCTACTTAAGATGAACTAATAACAACTGCAG

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026205

Click here to view details at Spud DB Genome Browser (opens in new window)


Source Transcript PGSC0003DMT400026205 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc02g089650.2 +2 0.0 820 388/399 (97%) genomic_reference:SL2.50ch02 gene_region:45984452-45986300 transcript_region:SL2.50ch02:45984452..45986300+ functional_description:Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262
TAIR PP10 AT1G61600.1 +2 2e-95 299 175/426 (41%) Protein of unknown function (DUF1262) | chr1:22729816-22731182 FORWARD LENGTH=421

Transcript Sequence (1526 bp)

>PGSC0003DMT400026205 1526 pgsc_dm_v3.4
TAAGAAAACATTATAAAATATCATATATGGTATAAATAACTCCCAAGCCTAAAAATTAAG
CATAACATCAAACACTAGCACAAAATTAGCAAAGATGTTTGCCACAGCACCACGTTCTCT
GTACAGAAATTTCCCAAAAGCACTTACAAAATTTCCAACAAATCCACCAACAATTACAGG
GTATTTAGTATTAACTGATGAAGAATCAGAAGAAATGGACACTTTTTGTTGGGGCATTTG
TAAGCACAGCAGTATCACTAAGCTTCCATTTCCTCAAGACAGAGTGTTGAAAGTTGTTCA
TAATCCAGAGTTTGGTGAACCTAGTGTTCATAAAGTTTGGTTCTTGCCTGTTCTTGATCA
ACCAATAGCATCCGGCCGCTACTATGTTATCAAAGCCAAAGGCAGACATAAAGGGAGGGC
CTATACATCTTGGAAAGAAGCAGATATGGATAGTTGTTGCTTTGACAATTCGATGAACGA
TTTAAATCCAAAGCCTTTTAACCACAAAGATCCCTATCAACAATTCGAGATTTGTCCATA
TGATCTTGGTGGTTTCTATGCAAAATCTGTAGCCTACGATGGTGTTCCTCCGAAATTTCT
CAGGAAAAAAGGATGGCACGTTAATAGTATCCATTCACTTAAAGTCAATTTGAAAGAAGC
TCAAGGCCTCCAATTATCCTCTCAACCATCAGACTCAGATACCCCTGAATTAAACATCCA
AGCATCTTCCAAACGTTCTGTTCCGATAATTCTTGGCAAATGGTATAGTCCATGTGTGTT
AGTAAAAGAGAAGAAAATTAAAACTAAAGAACAGATGAATAAATCATTGTTTTATGAAGT
GACACTTAAGTGTTGGTGGGAGCAAATATTTTCTTGTGAGAATGTAACAAGAAGAAACAG
AGCACATGTGGAGGTGGACGCGCGTGTGAGGAAGTTGTTAACTTTAATAAGTGGGACGGA
AGCTGTGAAAGATGAAGAAGGGAGTGGCGCGTTTGTTTGGTTTAGAGTAAAAGAGGAATA
TAGAAATAAATGTACATTGGAGAAAGTTGGTTTGCATAGTGGTGTTATTGAGAAAATGAG
ATGGATACAAGAAAGAAGGGGATGGTTTGATGGAGGAGAAAGTGATGTAAGAGTAGAAGG
TATAGAAGAAATAGAAAGTGAGAATGGCTATTGGAGAAAGTTTAGTTGTTATGTTTTGGT
GGAGAGTTTTGTGTTTAGGAGAATGGATGGAAGTTTGTTAATTAACTTTAATTTCAAGAA
CACTCAGAAAATTGTCTGTCAATGGGAATGAGGATACCTGAAAAAAATACAATATGATGC
ATTAAGCTTCTGTTTTGAGTCTGGAGAAAGGCGTCGGACCACAAGAGGATATCTGCATGA
AATAAAGATGTTGAATTGGTTCATGTTAATGTGTTGCTAGCTTCCACTTCTATATGTATA
TATATTTTATTTATATATATAGACTTCTGTTTGTAATCTTCTTCACACTGTTGTCTCTAC
TTAAGATGAACTAATAACAACTGCAG