Microarray Probes on PGSC0003DMT400009059

Probe IDChipProbe Sequence
CUST_5247_PI426222305 JHI_St_60k_v1 GTGAGCTATGATTGTTAGGCTCAGAAAGTTAATAGTGTGGTTTGGTTTTCTATCTTTGTA

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009059

Click here to view details at Spud DB Genome Browser (opens in new window)


Source Transcript PGSC0003DMT400009059 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT5G66440.1 +2 1e-32 124 92/259 (36%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252

Transcript Sequence (1240 bp)

>PGSC0003DMT400009059 1240 pgsc_dm_v3.4
CTAAATTCCTCACTCCTTTACTCTTCTCTCAGTAAATAATAGTAAGTAATAAGCAAAACC
GTCACTACATATCTACTCAAATTCCCTTTAGATTTTTCTGTGAAAAACCAACTTTTTCAA
TCGATCAGCATAGCTTGTTTTCATTGCTCTACAAATGGATGCTTTCGATTTCGGTACTGA
AAAAATGGAAAACAGAGTAATTCTGATATTCCACAGTTTCAAAAGCGTTGCCAAGCTTTT
TCGAATTGTTGAGCTTTGCGTTGGAGTTTTTGTGCTCTTATGGAGTTCTACTCGGTTACC
TTTTGTCGTCAAAATATCCGGCGAGTATTTCCGGCAACTTATCTCCATAATACTTAGCCC
TCTCTTCATTTTCCTTATTAGCAACGTCATCGTTCTCACTCTCTTCTTCAAATCTGGCCG
ATTCAACGGCGATTCATCAACGATCTCAAATAACACCGAAACTGAACTCTACGATTCATT
CATCGAAAAGGAAGAATGCTCCGGGAATTTCACCGCCGGAAACTCCTCTTCCGCACCGGC
ACGTGAACAAACTGTCTACCAAGACAAACAGACTATACTTGAAGTGAATGCTCAGACGAT
TTCGGAATCAGACGGTTCCGAAGAACCAGAGACGGAAACTGAAAAGGATTTTTATTCTCA
AATTCCACGGAGAACTAAATCGGCGAAGTTTGAAAGGGGAAGTAACAAGGAAATATACGG
TAAGCTTCGTAGATCGGAGACAGAGATGTACCGGAAAATCGATAATTCCGTTGATCCATC
GGAAACAGTTTATCCAGTGGATGAATTAAGCAATGAGGAGTTTCAGAAAGCCATTGAGGA
TTTCATTGCTAGGCAAATCAAATTTCATCAGGAAGAGAAGTTGGCTATTGTTCTTCATAG
CTAAACTTAATAAAGTGTATTTCTTACTCAATATTTACTGTATTGCCCATTAAAAGATAA
AAAAAATAGATAACATAAAATTAGGGGTTAATGTACAGATCAGTTAATGAATAATAGGAA
GGAGGCGTAAATCTGATGTGGAAAATAGGGGGAGAGCTCGTAGTTAATCTGAGCCGTTGA
TCTTTGCAGCGGATAAGAAGATTCAGTAATTCCGTGAATGCGTTGCGCTCGCTGTTTTAC
AAGAGTGAGCTATGATTGTTAGGCTCAGAAAGTTAATAGTGTGGTTTGGTTTTCTATCTT
TGTATTAAAATTAATTAATCAAGATGGAAAAAGGGAAGGA