Morex Gene Atlas Downloads
The text files are in tab-delimited format and can be opened in Excel. To save on file sizes the individual files in hvmxrtd_all_tpm_files.zip have an experiment id column which relates to the experiment names in the MorexAtlas_allProjects_paper_23Aug23_exp_ids.txt tab-delimited file. The meta-data spreadsheet has more details of the experiments.
| Description | Download File |
| All TPM values from the HvMxRTD Analysis (477 MB) | hvmxrtd_all_tpm_files.zip |
| List of experiments names and relationship to experiment IDs in hvmxrtd_all_tpm_files.zip | MorexAtlas_allProjects_paper_23Aug23_exp_ids.txt |
| Meta-data for the RNA-seq experiments | MorexAtlas_allProjects_paper_23Aug23.xlsx |
HvMxRTD Downloads
You can download the FASTA and GTF files for HvMXRTD here, plus annotation using BLAST and PANNZER
| Description | Download File |
| Morex Reference FASTA Sequence, used in HvMxRTD (note: large file) | 210316_Morex_V3_pseudomolecules_and_unplaced_scaffolds_ENA.zip |
| HvMxRTD transcripts FASTA file, unpadded | iso_rna_hvmx_merged_fasta.zip |
| HvMxRTD transcripts GTF file, unpadded | iso_rna_hvmx_merged_gtf.zip |
| HvMxRTD protein translations, FASTA file | iso_rna_hvmx_merged_transuite_v1_transfeat_pep.zip |
| HvMxRTD Top BLAST Match in Rice Predicted Peptides v7 (tab delimited) | iso_rna_hvmx_merged_vs_rice_1e10_tab.zip |
| HvMxRTD Top BLAST Match in Arabidopsis Predicted Peptides v10 (tab delimited) | iso_rna_hvmx_merged_vs_tair_1e10_tab.zip |
| HvMxRTD PANNZER Annotation (tab-delimited) | Hv_Mx.transcriptAnno_sorted.txt |