barSeed - Barley Seed Development Database

Probe CUST_9995_PI390587928

Source Contig U35_24687

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9995_PI390587928	Hv_44K_v2	CAAACATGTCTGCAGCTATGCATTTGGTTCAACAACTTTGCTTTTAAATTTGCATCTGGA	536	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12056.6	1499	7e-23	791 - 851	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.7	1627	7e-23	783 - 843	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.3	1916	7e-23	1299 - 1359	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.4	1467	7e-23	771 - 831	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.5	2549	7e-23	740 - 800	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.10	1521	7e-23	723 - 783	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.2	2715	7e-23	807 - 867	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.1	1610	7e-23	947 - 1007	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.8	1529	7e-23	764 - 824	98	60 / 61	minus	ABC15000
MLOC	MLOC_12056.9	1548	7e-23	783 - 843	98	60 / 61	minus	ABC15000
JLOC1	JLOC1_8053.5	1546	4e-23	602 - 662	98	60 / 61	plus
JLOC1	JLOC1_8053.4	1491	4e-23	578 - 638	98	60 / 61	plus
JLOC1	JLOC1_8053.3	1541	4e-23	578 - 638	98	60 / 61	plus
JLOC1	JLOC1_8053.2	1215	4e-23	271 - 331	98	60 / 61	plus
JLOC1	JLOC1_8053.1	1234	4e-23	271 - 331	98	60 / 61	plus
Harvest21	ABC15000	1254	1e-23	404 - 464	98	60 / 61	plus	ABC15000
Harvest35	U35_24687	596	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_20742	1322	1e-23	404 - 464	98	60 / 61	plus

Contig Sequence (596 bp)

>U35_24687 596 Hv_44K_v2
TCGAGCACTGTTGGCCTGGGTCGCTCTGTGCTTCTGTGGTGATTCAGGCGATAGTTCGTC
CTTCTTCGACTCCCCCCCCACGTGAACCGGAGCAGGAATTGCAACAAGAACAAATTCCCA
ATTCCCTCCGCCCCGAGCTCAAATCTTGCCCCCGCCTGCTTGATCGCCTCGTCTCCCTCG
TTTCTCCGTCTCGCGCGGCTTGGCCAGGGGGATCCGGCGCGGAGAGGAATGGCGTCGCCG
ATGTCCGGAGACGCACGCACGCCGCCCCGGGGGGCGGCGCCTTACGCCTTGTACCAGTTC
GGCACCAGCGGCGCCGCCGTCGCCGTCGCCACCGCCGCCACGCATCCGCTCGATGTTATC
AAAATTAGACTCCAAATGCAGCTTGCTGGGCAAAGAGGAAATTTAGTTGGGATGGGGGCA
ATATTTAAACAAATGGTAGAAAGGGAAGGGCCTCGATCACTCTACCTGGGATTTGCACCA
GCATTGACTAGATCCCTCATCTATGGTGGCCTTCGATTAGGACTGTATGAGCCTTGCAAA
CATGTCTGCAGCTATGCATTTGGTTCAACAACTTTGCTTTTAAATTTGCATCTGGA

Homology of Contig U35_24687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g05917.1	228	7e-58
Arabidopsis v10	None