barSeed - Barley Seed Development Database

Probe CUST_9947_PI390587928

Source Contig U35_15432

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9947_PI390587928	Hv_44K_v2	ATCCTCCACTGCAGGGGCTTCCATGTCACCTTCGTCAACTCCGAGTTCAACCACCGGCGG	129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359078	1674	2e-24	155 - 214	100	60 / 60	plus	ABC11709 ABC14081 ABC37155
MLOC	MLOC_73380.1	1468	2e-24	1263 - 1322	100	60 / 60	minus	ABC11709 ABC14081 ABC37155
JLOC1	JLOC1_48857.1	1462	8e-25	141 - 200	100	60 / 60	plus
Harvest35	U35_15432	500	3e-25	130 - 189	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_15432 500 Hv_44K_v2
CTTTTTTTGTCCAGCCACCCACGTAACGGCATGGGTTCCGCGCAGGCTGACGCCGACGTC
AAGCCGCACGTCGTGTGCGTGCCGCTGCCGGCGCAGGGGCACGTCACGCCGATGCTGAAG
CTGGCCAAGATCCTCCACTGCAGGGGCTTCCATGTCACCTTCGTCAACTCCGAGTTCAAC
CACCGGCGGCTCCTCCGCTCCCGCGGCGCTGGCGCACTGGACGGCATCGAGGGGTTCCGC
TTTGCCACCATACCGGACGGCCTCCCGCCGTCCGACGCCGATGTCACGCAGGACGTGCCG
TCCCTCTGCCGCTCCACCAAGGAGACCTGCCTCCCGCACTTCAAGAGCCTCCTTGCCGAG
CTCAACGCCTCCACCGAGTCGCCGCCGGTCACGTGCATCCTGGGCGACAACGTCATGACC
TTCACCCTCGACGCCGCACGGGACATTGGCGTGCCGTGCGCGCTGTTCTGGACTGCCAGC
GTCTGCGGCTACATGGGCTA

Homology of Contig U35_15432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37820.1	492	1e-75	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g11950.1	492	5e-88
Arabidopsis v10	AT1G22370.2	479	7e-57	\| Symbols: AtUGT85A5, UGT85A5 \| UDP-glucosyl transferase 85A5 \| chr1:7898116-7899879 REVERSE LENGTH=479