barSeed - Barley Seed Development Database

Probe CUST_9945_PI390587928

Source Contig U35_15434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9945_PI390587928	Hv_44K_v2	TTCCTCATGGATAAGGGCATCGCTCCCCTCAAAGATGAAGCGCAGCTGACGAACGGGTAC	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252107.1	1750	2e-24	498 - 557	100	60 / 60	plus	ABC11709 ABC22849
MLOC	MLOC_65245.2	1797	2e-24	1132 - 1191	100	60 / 60	minus	ABC11709 ABC22849
MLOC	MLOC_65245.1	1988	2e-24	1197 - 1256	100	60 / 60	minus	ABC11709 ABC22849
JLOC1	JLOC1_42922.1	2005	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC14604	928	3e-25	476 - 535	100	60 / 60	plus
Harvest35	U35_15434	1043	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (1043 bp)

>U35_15434 1043 Hv_44K_v2
GCAGCAGATTCCAAGAGCCGGCAAGATGGAGATGGAGAGGAAGCCTCACGCAGTGTTGGT
GCCGTTGCCGCAGCAGGGGCACATCGCGCCGATGCTGAAGCTGGCCAAGCTCCTTCACTG
CAAGGCCGGTTTCCACATTACCTTCGTCCACACCGAGTACAACCAACGGCGTCTGGTCCG
GTCCCACGGCCCCGGAGCCCTGACCGGCGTCCCGGGCTTCCGCTTCGCCACCATCCCCGA
CGGGCTGCCCCCGTCGGACGCAGACGCATCACAGGACCCGGCGTCCATCTGCTACTCCAC
AATGACCACCTGCCTCCCCCACTTCAAGAAGCTGCTCCAGGAGCTCAACGCCACGCCTGG
GATGCCGCCGGTGACGTGCGTTGTGGCGGACAACATCATGAGCTTCACCGTTGACGCCGC
GGCGGAGGTCGGCGTGCCGTGCGCGCTCTTCTTTACCGCCAGCGCCTGCGGCTACGTGGG
CTACCGCAACTTCAGGTTCCTCATGGATAAGGGCATCGCTCCCCTCAAAGATGAAGCGCA
GCTGACGAACGGGTACCTCGACACGCCGGTGCCCGATGCTCCTGGGATGAGCCAGCACAT
GCGCCTCCGTGACTTCCCCTCCTTCATCTGCACCACGGACCGTGGCGACGTGATGCTTAA
CTTCAACCTGCACGAGGTGGAGCGGTCGGGCCGCGCCGCCGCCGTCATCATCAACACCTT
GGACGAGCTGGAGCAGGCATCGCTGGATGCCATGCGCGCTATCCTTCCACCCACGTGCCC
GGTTTACACCATTGGCCCGCTCCACCTCCTCGCCCAAGGCCAAGGCCAAGGCCAAGTGCT
GCTCCCCGAGATACCCGAGGTGCTCTGGAAAGCAGACGGGTCCTGCCTCGAGTGGCTGGA
CGGAAGGGAGCCCGGGTCCGTGGTGTACGTCAACTTTGGGAGCCTCACCACCATGTCCGG
CGAGGAGCTGGTGGAGTTCGCGTGGGGCTTGGCCAACTGCGGCCACCCCTTCCTGTGGAT
CGTGAGGAAGGACCTGCTGGCGG

Homology of Contig U35_15434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36830.1	545	5e-165	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g46855.1	487	7e-161
Arabidopsis v10	AT1G22360.1	481	4e-112	\| Symbols: AtUGT85A2, UGT85A2 \| UDP-glucosyl transferase 85A2 \| chr1:7895068-7897527 REVERSE LENGTH=481