barSeed - Barley Seed Development Database

Probe CUST_9926_PI390587928

Source Contig U35_27418

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9926_PI390587928	Hv_44K_v2	AGAACATCGTCATCCACAAGGCGCATTTCACCAAGGACTGGATAGCCCGTCTCCGTGCCA	418	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361152	3385	2e-24	1004 - 1063	100	60 / 60	plus	ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 ABC09897 ABC09898 ABC26571
MLOC	MLOC_11854.1	2095	2e-24	912 - 971	100	60 / 60	minus	ABC09897 ABC09898
MLOC	MLOC_11854.2	2016	2e-24	912 - 971	100	60 / 60	minus	ABC09897 ABC09898
JLOC1	JLOC1_7901.1	2107	8e-25	1002 - 1061	100	60 / 60	plus
Harvest35	U35_27418	493	3e-25	419 - 478	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_27418 493 Hv_44K_v2
GTGCTGCTCAATGACCACGGCGCGCACGTCGTTGAGGCGTGTGTGGACGCCGACCTCGTC
GACGTGGCACCGCCCATGCCCAAGCCGGAGCTGCTGCTGCTGCACCCGAACCTGGAGGAA
GGGATGGACGAGGTGGTGGTGCTGCAGCTCACACGGTTCCGCTGCGGCTCCCTGGCCGTG
GGGTTCACGTCCAACCACGCCGTCACCGACGGCCGTGGCACCAGCAACTTCCTCGTCGCT
TGGGGGCGTGCCACCAGGGGAGTTGACATGGGCCTTCCCCCCGTGTACAACCACGACGAG
CTCTTCAAGTCACGTTCCGTGCCCCGCGTCGAGTTCGACCACCGCAATCGGGAGTATTAC
ATGCCAGTGCCACCGTTGCCCACCAAGGTCGGCAGCGACGCCGACGGCAAGATCAAGAAG
AACATCGTCATCCACAAGGCGCATTTCACCAAGGACTGGATAGCCCGTCTCCGTGCCAGC
GCGTCGGAAGGCC

Homology of Contig U35_27418 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37180.1	438	5e-60	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi3g02310.1	470	9e-64
Arabidopsis v10	None