barSeed - Barley Seed Development Database

Probe CUST_9916_PI390587928

Source Contig U35_15448

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9916_PI390587928	Hv_44K_v2	GAAACTCTGGTATATTCTGATGGCTGCTAAACGTTGGGAAGTTTTTGGACCGCCTCTAAA	974	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.860	2.048	1.206	0.744	0.284	0.313
Raw	2391.707	4039.677	2104.593	2037.824	279.604	329.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29520.1	789	2e-21	688 - 744	98	56 / 57	plus
Harvest21	ABC03335	1055	3e-25	975 - 1034	100	60 / 60	plus	ABC03335
Harvest35	U35_15448	1055	3e-25	975 - 1034	100	60 / 60	plus

Contig Sequence (1055 bp)

>U35_15448 1055 Hv_44K_v2
CCAACGCGCCGCTGCTCGCGCGGGGAGAGAGAAACAGACGAAGCCGAGATCGATCGAGCG
AACGCCGCCGCCGCATCGGAGCAAGCGCGCGAGCGAGCGAGCGACGCCGTCCCCGCCTCG
CTCGGCCCGGGAGTTAGGGCGCGATGGCGGCGCCGCCGGCCAGGGCTCGGGCCGACTACG
ACTACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGTGTTGGAAAAAGTTGTCTGCTCC
TACGGTTCTCAGATGGCTCCTTCACCACTAGCTTCATCACCACTATTGGCATTGACTTCA
AGATAAGGACTGTTGAGTTGGATGGCAAGCGGATTAAGTTGCAGATCTGGGATACTGCTG
GCCAAGAACGCTTTCGGACTATAACTACTGCCTACTACAGGGGAGCCATGGGCATTTTAC
TTGTTTATGATGTCACGGACGAGTCGTCATTCAATAACATAAGAAATTGGATCAAAAACA
TTGAACAACATGCTTCAGATAACGTGAGCAAAATTTTGGTGGGGAACAAAGCGGATATGG
ATGAAAGCAAAAGGGCTGTTCCCACTTCAAAGGGCCAGGCCCTGGCCGATGAATACGGGA
TCCAGTTCTTTGAAACGAGTGCAAAGACAAACATGAATGTCGAGCAGGTTTTCTTCTCTA
TTGCAAGAGACATCAAGCAGAGACTCTCGGAGGCTGATTCCAAGCCTGAGGGGGGAACTA
TCAAGATCAACACGGAGGGTGATGCCAGTGCAGCAGCAGGACAGAAGTCGGCTTGCTGTG
GGTCTTGAACCGTGGTCGCCACGGGAAAAGAGATAGTTGCGACACGGTGCTTGTAATTCT
TGTCATTCCATTCTTTGTGTGCTGGTTTCGTTGTGTTATTTAAGTTATCGCTGTTGTTAG
GATCTGGACAAATTGGTGTTAAGTCAGAGCAATTACTTGCAGTATCGGTGGAAACTTTTT
GTTTTTGTTGAGATGAAACTCTGGTATATTCTGATGGCTGCTAAACGTTGGGAAGTTTTT
GGACCGCCTCTAAAAAAAAAAAAAAGTAAACTCGC

Homology of Contig U35_15448 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60530.1	215	2e-116	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g03820.1	215	9e-118
Arabidopsis v10	AT3G46060.1	216	2e-107	\| Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A \| RAB GTPase homolog 8A \| chr3:16917908-16919740 FORWARD LENGTH=216