barSeed - Barley Seed Development Database

Probe CUST_98_PI415269222

Source Contig TA50757_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_98_PI415269222	Hv_44K_v2	TTACCACATGGTTCGAGTCGAACATCGACTAGATTGGCATTGTCAGACTCTTCTTTTGTC	1786	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360257	1867	2e-24	1509 - 1568	100	60 / 60	plus	ABC13556
MLOC	AK366701	1896	2e-24	1743 - 1802	100	60 / 60	plus	ABC13556
MLOC	MLOC_60909.1	1014	2e-24	638 - 697	100	60 / 60	plus	ABC13556
JLOC1	JLOC1_39754.2	2079	8e-25	1733 - 1792	100	60 / 60	plus
Harvest21	ABC13556	2182	3e-25	1786 - 1845	100	60 / 60	plus	ABC13556
Harvest35	U35_6382	2182	3e-25	1786 - 1845	100	60 / 60	plus

Contig Sequence (1849 bp)

>TA50757_4513 1849 Hv_44K_v2
ATGACATATGGAGGAGAGAGAAGGGGCAGCAATCCCACTACGGTCATCCACAAGACATTC
CTTCCTCTCCCTCTCTTCCGTGTGCTCGAGACGACATCTAGCAGCTGCTCCTCCCCGTCC
TTCCCTCGCCCCTACTTCTCTCCTCCTGTTCATAGCGCGGCCGGCGAGGATTTCCGTCGG
CGAGCACGAGAAGCAATTGGGATCGATCCTTGGATGGATGCAGCCCAGTGGCACCAGGGG
CTAGGGCTCGTGAAGCCCATGGAGGAGATGATCATGGCTGGAAACCCAAATCCTAATCCT
AATGGGAACCCGAGCCCACAGCCGGCGCCGCCGTCTGGCGCCGAAGCCCAGAGGGCTCCC
CTCCCTGGCCCGCCGGCAGCAGGAGCGGGCGCGGCGGCCGGGACGGGCTCCACCGAGCGG
AAGGCGGCGCGGCCGCAGAAGGAGAAGGCAATCAACTGCCCGAGGTGCAACTCTACCAAC
ACCAAGTTCTGCTACTACAACAACTACAGCCTCCAGCAGCCGCGCTACTTCTGCAAGACG
TGCCGCCGCTACTGGACCGAGGGCGGCTCGCTCCGCAACGTGCCCGTCGGCGGCGGCTCA
CGGAAGAACAAGAGATCGTCGTCCTCGGTGGTGTCGTCCGCGGCGGGCGCCGTCTCTACA
TCCGGGGCGGCGTCTGGGACGGTCCCCGTCGGCGGGATGCCGGCCAAGAACCCGAAGCTG
ATGCACGAGGGCGCGCACGACCTCAACCTGGCGTTCCCGCACCACCACGGCCGCGTCTTG
CACCCGTCCGAGTTCGCGGCGTTCCCTAGCCTGGAGAGCAGCAGCGTCTGCAACCCGGGA
GGCGCCATGGCGGCCAATGGCGTGGGCGGTGGGAGGGGCATGGGCACGTTTTCAGCGATG
GAGCTGCTGAGGAGCACCGGCTGCTACGTACCGCTGCCGCAGGTGCAGCTCGGGATGCCG
CCGGAGTACGCAGCCGCGGGGTTTGCGCTTGGCGAGTTCCGCATGCCCCTGCAGCATCAG
CAGCAACATCACCAGCAGCAGCAGCAGCAGCAGCAACAACATCACCAGCATCAGCATCAG
CATCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAGAACATGCTCGGGTTCTCG
CTGGACACGGGAGGAGGTGGCGACGGCGGGGGATACGGCGGCGGGTTGCAGGGGGCGCAG
GAGAGCGCAACGGGAAGGATGCTGTTCCCCTTTGAGGACTTGAAGCCGGGGGCTAACGCA
GCTGGAGGTGGTGGTGCAAGTGGCGGTGATCAGTTTGAGCACAGCAAAGAGCAAGGCGGC
GGCGGTGGCCATGAGACCCTGGGGTTCTGGAATAACAGCATGATCGGGAACGGCAGCAGC
AATGACGCCGGCGGTGGCGGTGGCGGCGGCTCGTGGTAGGATGGCGACAGCATGCATGGC
TCATGCACACGCGGTTGTCAGCATGTGGAGATGATAGGGATAGAGACAAGCGGGTTAATA
AGCGGTGGTGGTGATTAGTGTTACATATGGCGTTTGATCCTTCTTTTGATTGCGTTTGGT
TTTTCTACTGTTCTTGGCCTTCCTTCCTTAATTTCTTGGTGTTTGTTCATGTGTGTGGTG
ACGATCAACTTGGGGGTCTAACACAGCTGAGTACACAGATTAAGTAAGGTGTGTTGAACT
AGTGATTATACGGCTTCTACTATTTATCTTCTGCAACTGAATCTCTCATCTCTGATCACC
ATGACAATTTCATATGAAGTTGTTCATGTAGATGCANCCATTTTTTTTACCACATGGTTC
GAGTCGAACATCGACTAGATTGGCATTGTCAGACTCTTCTTTTGTCTTT

Homology of Contig TA50757_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45200.1	382	2e-100	protein\|dof zinc finger domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g51510.1	367	7e-86
Arabidopsis v10	None