barSeed - Barley Seed Development Database

Probe ABC13556

Source Contig ABC13556

barSeed

Links

Affymetrix Source Sequence (2182 bp)

>ABC13556 2182
TGACATATGGAGGAGAGAGAAGGGGCAGCAATCCCACTACGGTCATCCACAAGACATTCC
TTCCTCTCCCTCTCTTCCGTGTGCTCGAGACGACATCTAGCAGCTGCTCCTCCCCGTCCT
TCCCTCGCCCCTACTTCTCTCCTCCTGTTCATAGCGCGGCCGGCGAGGATTTCCGTCGGC
GAGCACGAGAAGCAATTGGGATCGATCCTTGGATGGATGCAGCCCAGTGGCACCAGGGGC
TAGGGCTCGTGAAGCCCATGGAGGAGATGATCATGGCTGGAAACCCAAATCCTAATCCTA
ATGGGAACCCGAGCCCACAGCCGGCGCCGCCGTCTGGCGCCGAAGCCCAGAGGGCTCCCC
TCCCTGGCCCGCCGGCAGCAGGAGCGGGCGCGGCGGCCGGGACGGGCTCCACCGAGCGGA
AGGCGGCGCGGCCGCAGAAGGAGAAGGCAATCAACTGCCCGAGGTGCAACTCTACCAACA
CCAAGTTCTGCTACTACAACAACTACAGCCTCCAGCAGCCGCGCTACTTCTGCAAGACGT
GCCGCCGCTACTGGACCGAGGGCGGCTCGCTCCGCAACGTGCCCGTCGGCGGCGGCTCAC
GGAAGAACAAGAGATCGTCGTCCTCGGTGGTGTCGTCCGCGGCGGGCGCCGTCTCTACAT
CCGGGGCGGCGTCTGGGACGGTCCCCGTCGGCGGGATGCCGGCCAAGAACCCGAAGCTGA
TGCACGAGGGCGCGCACGACCTCAACCTGGCGTTCCCGCACCACCACGGCCGCGTCTTGC
ACCCGTCCGAGTTCGCGGCGTTCCCTAGCCTGGAGAGCAGCAGCGTCTGCAACCCGGGAG
GCGCCATGGCGGCCAATGGCGTGGGCGGTGGGAGGGGCATGGGCACGTTTTCAGCGATGG
AGCTGCTGAGGAGCACCGGCTGCTACGTACCGCTGCCGCAGGTGCAGCTCGGGATGCCGC
CGGAGTACGCAGCCGCGGGGTTTGCGCTTGGCGAGTTCCGCATGCCCCTGCAGCATCAGC
AGCAACATCACCAGCAGCAGCAGCAGCAGCAGCAACAACATCACCAGCATCAGCATCAGC
ATCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAGAACATGCTCGGGTTCTCGC
TGGACACGGGAGGAGGTGGCGACGGCGGGGGATACGGCGGCGGGTTGCAGGGGGCGCAGG
AGAGCGCAACGGGAAGGATGCTGTTCCCCTTTGAGGACTTGAAGCCGGGGGCTAACGCAG
CTGGAGGTGGTGGTGCAAGTGGCGGTGATCAGTTTGAGCACAGCAAAGAGCAAGGCGGCG
GCGGTGGCCATGAGACCCTGGGGTTCTGGAATAACAGCATGATCGGGAACGGCAGCAGCA
ATGACGCCGGCGGTGGCGGTGGCGGCGGCTCGTGGTAGGATGGCGACAGCATGCATGGCT
CATGCACACGCGGTTGTCAGCATGTGGAGATGATAGGGATAGAGACAAGCGGGTTAATAA
GCGGTGGTGGTGATTAGTGTTACATATGGCGTTTGATCCTTCTTTTGATTGCGTTTGGTT
TTTCTACTGTTCTTGGCCTTCCTTCCTTAATTTCTTGGTGTTTGTTCATGTGTGTGGTGA
CGATCAACTTGGGGGTCTAACACAGCTGAGTACACAGATTAAGTAAGGTGTGTTGAACTA
GTGATTATACGGCTTCTACTATTTATCTTCTGCAACTGAATCTCTCATCTCTGATCACCA
TGACAATTTCATATGAAGTTGTTCATGTAGATGCCCCATTTTTTTTTACCACATGGTTCG
AGTCGAACATCGACTAGATTGGCATTGTCAGACTCTTCTTTTGTCTTTAGGTTTTGCATG
CATGCATCGGACCGTGCAGTATGTGGGTGAATGGATGTTGTGAAGGTTCATTCAATTTCA
GTGCAAGATTGGCATCATCACTTGTCAGTCAGTCAACACTCAACACATTGCTTTACAGTC
AGTTTGACACACTGTGCAGGCTGCAGGATCCTATATCGATCGGTTTGCTGTACTGATTTA
GAGGGCTACCTAGTAGCAGGCGTGTTTTCATGATCCACGGCTTTAGAACAACTTGTAATG
TGTATTTTATTGCCGTTTATATTATATACAAAATACATTAATATATAGACATATTTCCCT
CATCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366701	1896	0.0	3 - 1894	99	1887 / 1898	CUST_98_PI415269222	ABC13556
AK360257	1867	0.0	1 - 1867	99	1861 / 1873	CUST_2388_PI390587928 CUST_98_PI415269222	ABC13556
AK363473	1755	0.0	49 - 1755	99	1705 / 1713	None	ABC13556
MLOC_60909.1	1014	0.0	1 - 1014	99	1010 / 1014	CUST_2388_PI390587928 CUST_98_PI415269222	ABC13556
MLOC_60907.1	1525	0.0	576 - 1525	99	948 / 950	None	ABC13556
MLOC_60907.2	1240	0.0	521 - 1240	99	719 / 720	None	ABC13556
MLOC_60908.1	1195	2e-119	407 - 643	99	236 / 237	None	ABC13556
MLOC_68844.3	3243	1e-111	908 - 1482	80	474 / 593	CUST_8059_PI390587928	ABC13556 ABC35232
MLOC_68844.5	1876	1e-111	889 - 1463	80	474 / 593	None	ABC13556
MLOC_68844.2	3550	1e-111	1456 - 2030	80	474 / 593	CUST_8059_PI390587928	ABC13556 ABC35232
MLOC_68844.4	3732	1e-111	908 - 1482	80	474 / 593	CUST_8059_PI390587928	ABC13556 ABC35232
MLOC_68844.1	4453	1e-111	1516 - 2090	80	474 / 593	CUST_8059_PI390587928	ABC13556 ABC35232
AK376388	1574	7e-54	503 - 700	86	171 / 198	CUST_21435_PI390587928	ABC13556 ABC13717 ABC24499
MLOC_73724.1	1991	7e-54	751 - 948	86	171 / 198	None	ABC13556 ABC13717 ABC24499