barSeed - Barley Seed Development Database

Probe CUST_989_PI390587928

Source Contig U35_17826

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_989_PI390587928	Hv_44K_v2	TGTTGATCATGAGTTGCTTATTTTTAGCCCCTCTTCTGTTCTCCGACTTGCCGGGAATTT	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36477.1	874	2e-24	689 - 748	100	60 / 60	plus	ABC08802
MLOC	MLOC_36476.2	7879	2e-24	121 - 180	100	60 / 60	minus	ABC08802
MLOC	MLOC_36476.3	7874	2e-24	121 - 180	100	60 / 60	minus	ABC08802
MLOC	MLOC_36476.1	7879	2e-24	198 - 257	100	60 / 60	minus	ABC08802
MLOC	MLOC_36476.4	2350	9e-22	1 - 55	100	55 / 55	minus	ABC08802
JLOC1	JLOC1_23490.1	1454	8e-25	1120 - 1179	100	60 / 60	plus
Harvest21	ABC08802	832	3e-25	716 - 775	100	60 / 60	plus	ABC08802
Harvest35	U35_17826	845	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_17826 845 Hv_44K_v2
GACTCTCGCACGCAGGAAGGCGCCTCCTGCCTGGACAGACCTCTCCTTCCTTCCCCGCGA
GCACCGTCGCCGTCGTCGTCCATCCCGATGCAGCAGCGGCGCGGCCGGCCGTCCGGCACG
GATGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCCCGGTACCAGAGGGTCGCCGAC
GGCAGATCCCGCCTCGCCCGGCTCATCCTCGTGCAGATGCTGCACCAAGTCGCTGGGGGC
GCGTCGCTGCTGCTGTCGCTGTCGAAGGGGGCGGAGATAAACAAGTTCGCCGTGCTGTCC
GTGGCCGCCGGGCTGCTGGCCATTCTGTTGGGGGAATTTGGGCGGAGGCGGACTGTGGCA
GTGTTTCTTCGGTTGTACACAAGCTTGTCATCAATTGCTATTGCATTCTCTGTGACGTGC
ATTATTCGTTCAGACTTGTTCGTGAAGATCATGAAGCAAAACACAGCAGACATCACAAGC
TATGAGATGTTCGATGTGGTCCGTGTTGCGCTTGGTGTCCTGCTCCAATTGGTGGTCATC
GCAACAACAACCAGACTCCTGCAAAACATGTCTCCTCCCAAGAGAACCTCATGAAGGCCG
TGCGTGACACTGTAGCTGCGCTCTACCAGTACAAAGGAACACCGTCTTGGGTCTTATACT
CATGAAATAGAAATGCTATAGACCTCTAAAGAAACGGCAAATCTCCATGAGTCCATGTTG
ATCATGAGTTGCTTATTTTTAGCCCCTCTTCTGTTCTCCGACTTGCCGGGAATTTTTTTG
TGGTGGCTGAAAGGCTAATTGAAGAACTTCTATGTCTGGCTTTATGTAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_17826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36480.1	172	7e-80	protein\|expressed protein
Brachypodium v1_2	Bradi3g30780.1	169	2e-87
Arabidopsis v10	None