barSeed - Barley Seed Development Database

Probe CUST_9888_PI390587928

Source Contig U35_15454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9888_PI390587928	Hv_44K_v2	GCAGGTGGTGATGGTTTGATGTTTCGGTAATGGAAATGGGGATGTTCTCCGGTTAAAAAA	669	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.267	0.893	0.610	0.941	2.334	4.444
Raw	2372.777	12378.692	6511.317	15279.307	13379.267	28761.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60127.1	412	3e-22	51 - 106	100	56 / 56	plus	ABC03287
JLOC1	JLOC1_39182.1	284	1e-22	51 - 106	100	56 / 56	plus
Harvest21	ABC03287	787	3e-25	670 - 729	100	60 / 60	plus	ABC03287
Harvest35	U35_15454	787	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_15454 787 Hv_44K_v2
GAATCAACAAGCAATCCAACGCCGAGGAGATCGATCAGCGAGCGAGAATGGAGGGCAGGA
TGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTGCTGGACATCCCGGACG
GCGAGGCCGGCGGAGTCGGTGTAGCCGGCGGCGAGAAGCAGGGCCCGACGCGCGCCTACG
TACGCGACGCGCGCGCCATGGCAGCCACCCCCGCCGACGTGAAGGAGCTGCCGGGCGCGT
ACGCTTTCGTGGTGGACATGCCGGGGCTCGGATCCGGCGACATCAAGGTGCAGGTGGAGG
ACGAGCGGGTGCTGGTCATCAGCGGTGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAAGT
ACGTGCGGATGGAGCGACGCATGGGCAAGATGATGCGCAAGTTCGTGCTCCCCGAGAACG
CTGACATGGAGAAGATCGCGGCCGCGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGA
AGCTGCCGCCGCCCGAGCCTAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAAAAT
GAGATGCATGGTGTGTGCGCGTCGAATCGAAGCAGAGTATTGAGTGGGTAGCGAGTTTGC
TGTGATGAGTGGTGGAGTGTCAGTCTTTTCGTTTCGTCTGCTAGAGGAGGGTGTGTCGTC
GGTTCGTGCGCAGGTGGTGATGGTTTGATGTTTCGGTAATGGAAATGGGGATGTTCTCCG
GTTAAAAAAAAAAAAAAAAAGCGTATCTCTTGGCCACATAAAAAAAAAAAAAAAAGGGCG
GCCCCGC

Homology of Contig U35_15454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08860.1	167	5e-58	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g05380.1	166	1e-71
Arabidopsis v10	None