barSeed - Barley Seed Development Database

Probe CUST_9879_PI390587928

Source Contig U35_11136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9879_PI390587928	Hv_44K_v2	TGAAGTATCTTCACCCTGACCTTGGTGTTGAATTACCTGAAAGATCCTACGGAACCGACT	554	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372087	2659	2e-24	724 - 783	100	60 / 60	minus	ABC03454 ABC03456 ABC03457 ABC16873 ABC31801
MLOC	MLOC_64379.4	1030	2e-24	268 - 327	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.5	861	2e-24	202 - 261	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.6	867	2e-24	202 - 261	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.7	942	2e-24	202 - 261	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.8	779	2e-24	35 - 94	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.9	1032	2e-24	27 - 86	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.1	1372	2e-24	291 - 350	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.2	1378	2e-24	291 - 350	100	60 / 60	plus	ABC16873
MLOC	MLOC_64379.3	1388	2e-24	291 - 350	100	60 / 60	plus	ABC16873
JLOC1	JLOC1_42271.5	1210	8e-25	29 - 88	100	60 / 60	plus
JLOC1	JLOC1_42271.4	1176	8e-25	35 - 94	100	60 / 60	plus
JLOC1	JLOC1_42271.3	1266	8e-25	91 - 150	100	60 / 60	plus
JLOC1	JLOC1_42271.2	1248	8e-25	91 - 150	100	60 / 60	plus
JLOC1	JLOC1_42271.1	1282	8e-25	91 - 150	100	60 / 60	plus
Harvest21	ABC25405	638	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_11136	638	3e-25	555 - 614	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_11136 638 Hv_44K_v2
GATACTGCAAGAAGCAGGATCAATCTCCCCCCCAACGCGCCCTAAATCCCCCCGCCGCCG
ACGCGTCCATCAATCCCCCACCCTCCCGCCTCTCTCGCGCGCGCGTGCCGCCGCCGCCGT
GGCCGCCCTCCCTCCCTCCCTCCCTCCCCGGGACACCGAGCTCCCGCCGCCGCGCCTCGA
GGTGGTAATTTCTGCCAAGGTCGTGGTAGCCATGGAGGTCAACGGTCGCCACAAGCCTAC
AAGAGAGTATATTTCCAGAGACTGCAACGGTGTAAAACCGCCCAGTAATTTCGGCGAAGT
TGACCCCTGGACCGCGTGGGCGTACAGGCCGCGGACCATCTCCTTGTTACTGATGGGAAC
CTGCTTTTTAATTTGGGCAAGTGGCGCTCTTAATCCAGAAGGAAGCTTCTCTCCTGACCG
TGTCTCATCTGTAAAAAGTGTGCTCATCAGACCACATCCTGCAATTTGGCGCCTGGTCCA
TGGATTGGCAGTTGTTTACCTTGTGGCCCTCACATTTTTGCTTTTTCAGACTCGTGATGA
TGCTAGGCAGTTCATGAAGTATCTTCACCCTGACCTTGGTGTTGAATTACCTGAAAGATC
CTACGGAACCGACTGCCGCATCTATGTACCTGATCATC

Homology of Contig U35_11136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02890.1	425	5e-83	protein\|phosphatidylserine synthase, putative, expressed
Brachypodium v1_2	Bradi2g01370.1	426	2e-89
Arabidopsis v10	AT1G15110.2	453	5e-60	phosphatidyl serine synthase family protein \| chr1:5199594-5201988 FORWARD LENGTH=453