barSeed - Barley Seed Development Database

Probe CUST_9864_PI390587928

Source Contig U35_11143

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9864_PI390587928	Hv_44K_v2	AATATTTATTATGTGATTTGGAAAACGTGTGAAATGGAACCTGGCTGATGTTACCCAGTT	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45945.1	648	3e-22	22 - 80	98	59 / 60	minus	ABC23156 ABC24312 ABC30267
MLOC	MLOC_45945.2	552	3e-22	22 - 80	98	59 / 60	minus	ABC04655 ABC23156 ABC24312 ABC30267
JLOC1	JLOC1_29785.1	554	1e-22	464 - 522	98	59 / 60	plus
Harvest21	ABC23156	473	3e-25	25 - 84	100	60 / 60	minus	ABC23156
Harvest35	U35_11143	473	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_11143 473 Hv_44K_v2
TCAAAACACAAGTCCATTATTTTCCCTTGTAGGCCCATGTGCCACTGATATCAAATTGAA
CTCTTAGAAATAAGACTAACGTTTCATTTCATACATGAATTTCTTCATGCATGTGTTTGA
ACTTTTGGACCTTCTTGCAAATCTAATATTTTAACCACCTACAGGTCAACTTAATCAATC
TTGACACCAGCATCAGGAATCATTCGGGCGGTAGTGTCACGAGCCCTTCGTCACTCAGAG
AATATACATTGTGTTCACTCGTTTACAGTAGCTTGAGGCATACTAGGTCGAATGTTGAAG
ATTGTAATATTGTAATGGTAGGCATATCTGGGTTGGATTAGACATGTACATATTGTAGTA
GGCTTATTTATCATTCTTGTTCTGTTTGAAATATTTATTATGTGATTTGGAAAACGTGTG
AAATGGAACCTGGCTGATGTTACCCAGTTATGAAAATAAAAAAAAAAAAAAAA

Homology of Contig U35_11143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None