barSeed - Barley Seed Development Database

Probe CUST_9812_PI390587928

Source Contig U35_23143

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9812_PI390587928	Hv_44K_v2	CGTATAAGCCATTCCATTGGGTAAGGATTCATTCCTTAAAGCTGGCTTATACTTAGGTGC	1175	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.999	1.262	1.289	1.187	0.665	0.539
Raw	11.501	22.110	20.576	27.144	4.628	3.225

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249301.1	4111	7e-23	3078 - 3137	98	59 / 60	plus	ABC12300 ABC24674 ABC35191
Harvest21	ABC24674	700	3e-25	592 - 651	100	60 / 60	plus	ABC24674
Harvest35	U35_23143	1284	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (1284 bp)

>U35_23143 1284 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTATCATCCTCTCCCCTTCTCAC
CTGACGCCTAAACTTCTCCTCTGTGGCGGCGATGGCGAACGGCCGCTGATCGCAGCGACC
TCCGACGAGCAGTCCTCCGAAAAAAGAGCAGGATTTTGTTATTCAGAACATGGATCCAAC
AGACGTGTTGGCTGTTAGATTTCACTTTGGGGGCGAGTTCATACGGATTGGAGGGGTTGC
TGAAGTATACGTTGAGTATACCATCCAGAGTGGCTACAAGTTCAACAACTGGAAGAGGAA
GAGGAGTTGGGAGAGGGACTAGAGCTGGAAGAGGGACTGGAGTTGGAAGAGGGACAGAAT
CAGGATCTAGATTCATGTCCTATTTTACAGCTAGTGGAATTACTAGAGGTGTTTGATGAT
GTGGTTATTTTGGAAAATGTCAGAATGATGTACTGGACCTTGGTAGTTTTTGTGTGAACA
TAGACCTTGTGGTACTATAAATGACCACTATTTATGTTCAATGTTGGCTGATGCAGCATG
ATCCTTAAGTGCAGTGCATTTGTACTGTAAATTGGCAAATTCAGACTTTTGCACTGATAA
ATACAGAATTTTGTTGAGCGGCCGCTGGCCAAGTACAATTCACTGTCTTTGCCCATGGCA
AGTGTACCAAAATACTGTCAAACACCTTAATCACATCTTCCAAGGCGCTAAAACATTTGC
AAAGGATTTCAGCAGATGTGTCTATGATTATGAGGATGAAGAGGGTTTCTTGGTAGGATG
GAGAACCATGCTAGAGAAGTATGATCTAAGAAACAATGAATGGCTTCATGAGTTCTTCAA
AGATCGAGATAAATGGGCATCAGCGTACAATCAACATGTATTCACCGCAGATATAAAAAG
TTCATTGCAGTTAGAAAGTGTTAGCAATGTCTTGAGAAAGTACCTGAGTCCACAGTTTGA
TTTCTTGTCTTTCTTCAAGCACTATGAAAGAGTTTTGGACGAGTCTTGTCTTGTCTTTTG
GCAATGTTTATGAAACGTGAATGAAGTAAGATGCCAGAAACCAAGTGAAGAAATTGATAG
ATATTTTATTGGCCTAGCTGTTAAAAACTATATGTAAAAAATATCTTTCTATAATTTTAG
TATTAGCAAACTAATTCTGATGATAGTAGTAGATTCGTATAAGCCATTCCATTGGGTAAG
GATTCATTCCTTAAAGCTGGCTTATACTTAGGTGCNTAATTATAGTTTTTGTGTCAATCC
ATTCTCATTCATTGTATACTTTTA

Homology of Contig U35_23143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08370.1	733	1e-65	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g20830.2	712	1e-53
Arabidopsis v10	None