barSeed - Barley Seed Development Database

Probe CUST_9758_PI390587928

Source Contig U35_16201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9758_PI390587928	Hv_44K_v2	TGAAGAGAAACAGGCCTGTTTGGTTTGGGTTCTCTTGTGCCTCGGATTATTCTATTCCTC	761	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.383	2.946	1.078	0.945	0.324	0.306
Raw	156.414	180.361	54.256	78.279	8.924	9.083

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360353	1648	2e-24	1486 - 1545	100	60 / 60	plus	ABC05272 ABC05274 ABC05275
MLOC	MLOC_73598.1	1632	2e-24	117 - 176	100	60 / 60	minus	ABC05272 ABC05274 ABC05275
JLOC1	JLOC1_49002.1	1706	8e-25	1475 - 1534	100	60 / 60	plus
Harvest21	ABC05276	445	3e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC05272	853	3e-25	737 - 796	100	60 / 60	plus	ABC05272
Harvest35	U35_16201	878	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (878 bp)

>U35_16201 878 Hv_44K_v2
GGGTTCATCCAGACAAACAACCAGATAGCCATGGGCGCGAGCATCTTCCCTATCTCCAAC
TATGGTGGCTCCCAATATGATATCAACATTTTGGTATGGAAGGACCCGAAGGAGGGCAAC
TGGTGGCTGCAGTTCGGCAACGACTACGTGCTGGGCTACTGGCCGTCCTTCCTCTTCTCG
TACCTGGCGGACAGCGCGTCGATGATCGAGTGGGGCGGCGAGGTGGTGAACACGGAGCCG
GACGGCAGCCACACGTCCACGCAGATGGGCAGCGGCCACTTCCCGGAGGAGGGGTTCAGC
AAGTCGAGCTACTTCAAGAATATCCAGGTGGTGGACTCGTCCAACAACCTCAAGGCGCCG
AGGGGGATCGGGTCCTTCACCGAGCAGTCCAACTGCTACGACGTGCAGAACGGCAACAAT
GGCGACTGGGGCACCTACTTCTACTACGGGGGCCCCGGGAAGAACCCCAACTGTCCATAG
CAAGAAATGTGATGAACTAAAATGCCATCCATGCCCTAACAAGACGACAACACGCACCCC
CTTGACGCCCATGTATTGTCCAGTAAATTAGTTCGTTCACACCTCTCTCTCTTCTTTTTC
CATATTTTTTTGTCTTGGTTTTTGGTTTCAAGTTTTGGTTCGAGGAGTTGATTAATTTCT
AGGTAAGGTAAGGCAAGTGTTTGACATGTGGGTTTGTTCTCTGCCTCGGAGAGATGTTGG
TCTGGGTTCCGTTCTGGGGAGGAGGAGTGTGGTCAAGTTTCTGAAGAGAAACAGGCCTGT
TTGGTTTGGGTTCTCTTGTGCCTCGGATTATTCTATTCCTCCCATGGTCACCAACCAACC
CCTCTGTTGAGTTGTGTGCATGTGTGAGCACCAAAAAA

Homology of Contig U35_16201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38590.1	431	2e-112	protein\|carboxyl-terminal peptidase, putative, expressed
Brachypodium v1_2	Bradi1g23920.1	430	9e-113
Arabidopsis v10	AT1G55360.1	422	5e-94	Protein of Unknown Function (DUF239) \| chr1:20666526-20668502 REVERSE LENGTH=422