barSeed - Barley Seed Development Database

Probe CUST_9757_PI390587928

Source Contig U35_16202

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9757_PI390587928	Hv_44K_v2	GTGATGGCCTACCAAAGGGTCCTTTTTCATACTGTGGTAGTGGTAGATTCATTCAAAAAA	1817	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354787	2038	9e-22	1833 - 1887	100	55 / 55	plus	ABC05272 ABC05274 ABC05275 ABC46916
JLOC1	JLOC1_40843.1	2342	5e-22	1896 - 1950	100	55 / 55	plus
Harvest21	ABC05275	1934	2e-22	1809 - 1863	100	55 / 55	plus	ABC05275
Harvest35	U35_16202	1953	3e-25	1818 - 1877	100	60 / 60	plus

Contig Sequence (1953 bp)

>U35_16202 1953 Hv_44K_v2
GGCAGCCAAGACACACAACGCAACGCAACGCACTTGTAAACAAACCTCAGTCCCCCTAGC
CGCACTAGCGCCAGCGTCCCGAGTCCCCAAGCCCAGACGGCGAGCCGCCCCAGGAGCGGA
GGAGAGCGTGCCTCCCCCCTCCCCGCATTGTTTCAAAATCCTCAGGCCGGTCCCCGGAGG
CGGCGCGGCGGTAGGTCGCCGGCGGCGAGGGGTGTCTCTGGTGCAGAAGGGCGCCTGTTC
GTTCTTGAAGTTGTAGCCGGAGCAAGGTGCTGGGCGACAGAAGGGCTGGGGCGGAGGAGT
GAGTGAGCGAGGGGGAGCCATGTCCGCTGCGCGCGTCGTCGCGTGCCTGCTGGCGGCGGT
GATATGCCTCTCGTGCGGGGCGGTGGCCGCGGCGAGGTCGCCGGAGGCCAGGATGCACCG
CCACCTCAAGCGGCTCAACAAGCCGGCCGTCAAGAGCATAGAGAGCCCTGACGGGGACAT
CATAGACTGCGTGCACATCTCGCACCAGCCGGCCTTCGACCACCCTTTCCTCAAGAACCA
CACCATCCAGATGAGACCGAGCTATCACCCGGAGGGCCTGTACGACGAGTCCAAGGCCAA
TGTGGCCTCCTCCGGCGACGGCGAGAGGCCGATGGTTCAGCTGTGGCATCGGAACGGCAG
GTGCGCGCCGGGCACCGTCCCGGTCCGGAGGACCAAGAAGGACGACCTGATGCGCGCGAG
CTCGATGCGGCGCTACGGCAGGAAGCACAAGCCCACGGTGGCGAACCCGATGTCGGTCGA
TCTCGCCATGCTCAACGAGGGCGGCCATCAACACGCGATATCGTACGTTCAGGGCGAGAA
GTACTACGGCGCCAAGGCGACGATCAACGTTTGGGAGCCCAAGATCGAGCAGCCCAACGA
GTTCAGCCTGTCCCAGCTGTGGATCTTGGGGGGCTCCTTCGGCGAGGACCTCAACAGCAT
CGAGGCTGGCTGGCAGGTTAGCCCTGACCTCTATGGGGACAACAACACAAGACTGTTCAC
ATACTGGACTAGTGATGCGTACCAGGCAACAGGGTGCTACAACATACTCTGCTCAGGGTT
CGTCCAGATCAACAACGAGGTCGCCATGGGGGCCAGCATCTTCCCCATCTCGGGATACTC
CGGCTCGCAGTACGACATCAGCATACTCATCTGGAAGGATCCGAAGGAGGGTCACTGGTG
GATGCAGTTTGGTAAGGAGTACGTGCTGGGGTACTGGCCGTCGTTCCTCTTCTCGTACCT
GGCGGACAGCGCGTCGATGATCGAGTGGGGCGGGGAGGTGGTGAACTCGCAGGCGGAGGG
GGTGCACACGTCGACGCAGATGGGCAGCGGGCACTTCCCGGAGGAAGGGTTCGGCAAGTC
GAGCTACTTCAAAAACATCCAGGTGGTGGACAGCACCAACAACCTCAAGGCGCCCCATGG
GCTGGGCACCTTCACGGAGCAGTCCAACTGCTACGACGTGCAGAACGGCAACAACGGCGA
CTGGGGCACCTACTTCTACTATGGCGGCCCCGGCCGGAGCGCCAACTGCCAGTGATCAGG
AAGACCACCCTCTACCCTAGTGACTGAGTGAGAGCGAGTGTGCACCATTGGAAGTGTAGT
GTGGTGCACCATCCATCCATCCATCCATCTGCATTATAAGTCAGTCAGTCTCGTTAGGCC
TAGATGATGATGATAGGTGTCATGTGAATGGGTCCTGCCTCCTGATTTTTCTTTTCTTTT
CTTCTTCCTGTTTCCCTGTGTCAATCAAGGCTTCTGAAGAGAAGCATGGCATGTGGATGT
GGTGGTGCACCAGTTGTGTGATGGCCTACCAAAGGGTCCTTTTTCATACTGTGGTAGTGG
TAGATTCATTCAAAAAAAAAAAAAAAAATGTCTTTCTTCTTTGGGGGCTATTATTGGATG
GATGGGGGGTTTTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g59240.1	411	protein\|carboxyl-terminal peptidase, putative, expressed
Brachypodium v1_2	Bradi1g04720.1	416
Arabidopsis v10	AT1G55360.1	422	Protein of Unknown Function (DUF239) \| chr1:20666526-20668502 REVERSE LENGTH=422