barSeed - Barley Seed Development Database

Probe CUST_9756_PI390587928

Source Contig U35_16203

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9756_PI390587928	Hv_44K_v2	GTCAAGAGCATCGAGAGCCCTGACGGGGACATCATAGACTGCGTGCACATCTCGCACCAG	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62411.1	1970	2e-24	648 - 707	100	60 / 60	plus	ABC05272 ABC05274 ABC05275 ABC46916
MLOC	AK354787	2038	7e-23	464 - 523	98	59 / 60	plus	ABC05272 ABC05274 ABC05275 ABC46916
JLOC1	JLOC1_40843.1	2342	8e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC05273	515	1e-24	457 - 515	100	59 / 59	plus
Harvest21	ABC05275	1934	1e-23	440 - 499	98	59 / 60	plus	ABC05275
Harvest35	U35_16203	516	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_16202	1953	1e-23	449 - 508	98	59 / 60	plus

Contig Sequence (516 bp)

>U35_16203 516 Hv_44K_v2
CAACGCGGCCGGGTGGTGGCNGGGGCGTCCACTTCCACTGCCCACTTGTAAACAAACCTC
AGTCCCCTAGCCGCACTAGCGCCAGCGTCCCGAGTCCCCAAGCCCAGACGGCGAGCCGCC
CCAGGAGCGGAGGAGAGCGTGCCACCCCCCTCCCCCTCCCCGCATTGTTTCAAAATCCGC
AGGCCGGTCCCCGCAGGCGGCGCGGCGGTAGGTCGCCGGCGGCGAGGGGTGTCTCTGGTG
CAGAAGGGCGCCTGTTCGTTCTTCAAGTTGTAGCCGGAGCAAGGTGCTGGGCGACAGAAG
GGCTGGGGCGGAGGAGTGAGTGAGCGAGGGGGAGCCATGTCCGCTGCGCGCGTCGTCGCA
TGCCTGCTGGCGGCGGTGATGTGCCTCTCCTGCGAGGCGGCGAGGTCGCCGGAGGCCAGG
ATGCACCGCCACCTCAAGCGCCTCAACAAGCCGGCCGTCAAGAGCATCGAGAGCCCTGAC
GGGGACATCATAGACTGCGTGCACATCTCGCACCAG

Homology of Contig U35_16203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None