barSeed - Barley Seed Development Database

Probe CUST_9751_PI390587928

Source Contig U35_361

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9751_PI390587928	Hv_44K_v2	CTTGTATGTGTAATCACAAGTTACGTACTAATAAAGGACCTTTGTGAGCTGATTGAACAA	812	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368196	909	6e-24	804 - 862	100	59 / 59	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC04185 ABC31028
JLOC1	JLOC1_38406.1	1000	3e-24	864 - 922	100	59 / 59	plus
Harvest21	ABC01249	861	1e-24	22 - 80	100	59 / 59	minus	ABC01249
Harvest35	U35_361	888	3e-25	813 - 872	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_361 888 Hv_44K_v2
TGCAGGAATTCGGTACGAGGGCAGCTAGCCTGGACTACTACCGCGAGAGCTACGGCTCGT
ACGGGATGGCGACGCCGGGGTACGCGCCCCCGGTGCCGTACGGCATGTCGCAGGTGAACG
TCGACGGCAACTGCGGCGGTCGGCCGATGCCGCCGCAGCCTACGGTGAAGATCTACTGCC
GCGCCAACCCCAACTACGCCATGTCCGTGCGCAACGGCAAGGTGGTGCTCGCGCCGGCCA
ACCCCAAGGACGACTACCAGCACTGGATCAAGGACATGAGGTGGAGCACCAGCATCAAGG
ACGAGGAGGGCTACCCCGCCTTCGCCATCGTGAACAAGGCCACTGGCCAGGCCATCAAGC
ACTCCCTCGGCCAGTCCCACCCTGTGCGTCTGGTGCCGTACAACCCGGACTTCCTGGACG
AGTCGGTGCTGTGGACGGAGAGCAGGGACGTGGGCAACGGCTTCAGGTGCGTGCGCATGG
TGAACAACATCTACCTCAACTTCGACGCCCTCAACGGCGACAAGTACCACGGCGGCGTCC
GCGACGGCACCGAGGTCGTGCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGA
TCCAGCCCTACTACTGAGCAGGGCAGCGCGCGCCGTGCATGGATCGATGCATGCATGGCT
CGCGCACGTACGCGTGGACATGCATCGGCATATCCACGCTCATGTGTACGTACGTATCTA
CTGAAGAAACGATGTGGGCTGTCCCGGATGAACAACATGCATGCGTCTCTCGCTAGTCGC
TCCCTACGCCGCAGAATAACGGAGCCGTTGTGCTTGTATGTGTAATCACAAGTTACGTAC
TAATAAAGGACCTTTGTGAGCTGATTGAACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48500.1	205	2e-129	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g17450.1	200	1e-133
Arabidopsis v10	AT2G39050.1	317	1e-66	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317