barSeed - Barley Seed Development Database

Probe CUST_9747_PI390587928

Source Contig U35_363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9747_PI390587928	Hv_44K_v2	AACATTGGATGTTGTCGCCTTGAAAACATCATTTGGCAAAAAGGGGTTTTCGACACAGGA	706	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55370.1	1466	2e-24	620 - 679	100	60 / 60	minus	ABC00825 ABC00991
JLOC1	JLOC1_35708.1	2526	8e-25	1845 - 1904	100	60 / 60	plus
Harvest21	ABC00991	808	3e-25	537 - 596	100	60 / 60	minus	ABC00991
Harvest35	U35_363	1205	3e-25	707 - 766	100	60 / 60	plus

Contig Sequence (1205 bp)

>U35_363 1205 Hv_44K_v2
GCAGCAACCATTACTGACATTCAAACAAGGCAAGCAGGAAGGGGATGGAGCTCACCAACA
TCCCCCATCTTGCCTCCTCCTCCAGCTTCTTCTTCTCCAGCTGCAGTCCTTGCGCCTGCA
GGAGTAGAAGAACTGGGAAGGCTGTGATAACAGCGTTTGCTGCTGGTAGTAGGTGCAGTG
CTGATCCTGCATGCCCAGAGCCCATTGAACAGCATAATGTGAACAGCCTTTCAGTGGCCT
CAGGTCCTGCAAATACCCAATGTTATAGAAGGAGAGATTTTGCTGCTGTTGCTCTGCTCC
CTTTTCTACTTCCTCATGTTGATATGGCGAGTGCGGCTGACTCATATGATGGATCAATTA
TTCGAGACGGAGTGAGGAATGTCTTATCCAAGGTGAAAGCAGCTGGCGTGCTTCGTTTGG
TTTTCCATGATGCAGGGACTTTTGATATTAGCGACAAATCAGGTGGAATGAATGGCTCCA
TAATTTATGAAGCTGACAGACCTGAAAATACAGGACTTAGTAAATCCTTAAAGATACTAC
GAAAAGCAAAAGAAGGAATCGACCAGGTTCAGCAAGTGTCATGGGCGGACTTAATCACAG
TGGCTGGTGCTGAAGCAGTTGCACTCTGTGGAGGGCCTGAAATTCCCGTAAGACTAGGCC
GATTAGATTCCAGCACTGCTGATCCTACCGGTAAACTTCCTGAAGAAACATTGGATGTTG
TCGCCTTGAAAACATCATTTGGCAAAAAGGGGTTTTCGACACAGGAGATGGTCGTTTTAT
CTGGAGCTCACACAATTGGGGGTAAAGGATTTGGGAATCCAAATGCTTTTGATAACGCCT
ATTTCAAAGTACTCCTTGAGAAGCCACGGCCGACTTCATCTGGCATGCCGATAGGGCTGC
CCACGGACTGGGCACTCACTGAAGATGATGAATGCTTGAGGTGGATCAACATCTATGCGG
AGGACCAGGATAAATTTTTCGCCGATTTCAGAGATGCATATACCAAGCTTGTAAACAGTG
GAGCCTCGTGGAGAACAACTTAGCTAGAATTACCTAGTTTTTTCGTCGAAATGGAGGTGT
CACCCTAGCCTCTACAGGATCGATGCACGCAACTGTAGAAGTTTTGCTACATGTGTAAGA
TTCGTGCAAATTTTGCTCACAGCATATCCTTGCCCGTTCTGTAGTGATTCACTGCTGCCC
TATCT

Homology of Contig U35_363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41090.1	332	1e-159	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g40330.1	330	3e-175
Arabidopsis v10	AT4G32320.1	329	1e-103	\| Symbols: APX6 \| ascorbate peroxidase 6 \| chr4:15602777-15605234 FORWARD LENGTH=329