barSeed - Barley Seed Development Database

Probe CUST_9742_PI390587928

Source Contig U35_367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9742_PI390587928	Hv_44K_v2	TTTTATGAGATGACTGAGGAATCACTCAGGGCTTATAAGGGCGAGAGAGATGGCAATGAA	399	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15661.2	2786	2e-24	2585 - 2644	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_15661.1	2483	2e-24	2034 - 2093	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_15661.3	2968	2e-24	2403 - 2462	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1	JLOC1_10749.1	2890	8e-25	389 - 448	100	60 / 60	plus
Harvest21	ABC00889	745	3e-25	400 - 459	100	60 / 60	plus
Harvest35	U35_367	745	3e-25	400 - 459	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_367 745 Hv_44K_v2
TGCAGAATTCGCCGAGGCACAGGCCCAGGGGGATCGCCTAGGTCCTTCTCCTGCGCCTTC
GCTCGGCGCCGTCCAGGGCTGTCCTCATCTCATTCCTCCTGAATCCTGATAGCGAGGGGG
ATCCTCAAGGAATTTATATTTGTAGTGTGATAATCAAAAGCAGTCAAGATGGTGAAATTC
ACAGTAGAAGGACTCCGCATCATCATGGACAAGCAAAATAATATTCGTAACATGTCTGTT
ATTGCTCATGTCGACCATGGAAAGTCTACGCTTACTGATTCTCTGGTGGCAGCTGCCGGG
ATTATTGCACAAGAAGTTGCAGGTGACGTCCGCATGACTGATACTCGTGCAGATGAAGCA
GAGCGTGGTATCACAATCAAATCCACGGGTATATCTCTTTTTTATGAGATGACTGAGGAA
TCACTCAGGGCTTATAAGGGCGAGAGAGATGGCAATGAATACCTGATCAACCTTATAGAT
TCTCCTGGGCACGTTGATTTCTCTTCGGAAGTCACAGCTGCTCTTCGTATTACTGATGGT
GCTTTGGTGGTGGTTGACTGTATTGAGGGTGTATGTGTGCAAACTGAGACTGTGCTTCGC
CAAGCCCTTGGTGAGAGGATTAGGCCTGTCCTTACCGTGAACAAGATGGACAGATGCTTC
CTTGAGCTTCAGGTTGACGGCGAGGAAGCTTACCAGACTTTCTCCCGCGTCATTGAGAAC
GCCAATGTCATTATGGCAACATATG

Homology of Contig U35_367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02820.3	652	5e-117	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844	3e-115
Arabidopsis v10	AT1G56070.1	843	2e-111	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843