barSeed - Barley Seed Development Database

Probe CUST_9740_PI390587928

Source Contig U35_369

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9740_PI390587928	Hv_44K_v2	ATTGATCAATCAATTGTAAATGGAATTATTTGGGGAACGAGAGGGGCACGCGGTTGCGCT	1727	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.131	0.878	0.557	2.426	0.957	1.163
Raw	17.124	10.094	5.562	50.969	5.243	7.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362010	2458	2e-24	2384 - 2443	100	60 / 60	plus	ABC02490 ABC02491 ABC02493 ABC02495
MLOC	MLOC_56803.2	2713	2e-24	2621 - 2680	100	60 / 60	plus	ABC02490 ABC02493 ABC02495
MLOC	MLOC_56803.3	2076	2e-24	1993 - 2052	100	60 / 60	plus	ABC02490 ABC02493 ABC02495
JLOC1	JLOC1_36773.2	2758	8e-25	2563 - 2622	100	60 / 60	plus
JLOC1	JLOC1_36773.1	2722	8e-25	2527 - 2586	100	60 / 60	plus
Harvest21	ABC02495	404	3e-25	33 - 92	100	60 / 60	minus	ABC02495
Harvest21	ABC02493	1266	8e-21	1185 - 1247	95	60 / 63	plus	ABC02493
Harvest35	U35_369	1845	3e-25	1728 - 1787	100	60 / 60	plus

Contig Sequence (1845 bp)

>U35_369 1845 Hv_44K_v2
CTGACCAGTGGTACGACATCTTCGGCGTCTGGACCGGCTCCGACACCGTGCTCCCAGACG
GCTCCCTCGTCATGCTCTACACCGGTTCTACCAACGCTTCCGTGCAGGTCCAATGCCTCG
CCGTGCCCACCGACCCCAACGACTCCCTCCTCCGCAATTGGACCAAGCACGAGGCCAACC
CTATCCTCTTCCCGCCTCCCGGCATCGGCGACAAGGACTTTCGTGACCCCACCACCGCTT
GGTTCGACGAGTCCGACAAGACGTGGCGCATCGTCATCGGGTCCAAGGACAACCACGGGC
ACACCGGCATCGTCATGACATACAAGACAAAGGACTTTATCAACTATGAGCTCATCCCCA
ACTTGCTCCATAGCGTCACTGGCACTGGCATGTGGGAGTGCATCGACTTCTACCCTGTCG
GTGGGGCCGATGGCTCGGAGGAGTTGTACGTGATGAAGGAGAGCAGCGACGACGACCGCC
ACGACTGGTACGCGCTCGGGAGGTACGACGCTGCTGCCAACAAGTATACAGCGATAGACG
CGGAGATGGATGTTGGGATCGGTCTGAGGTATGACTGGGGCAAGTTCTACGCGTCCAAGA
CCTTCTACGACCCCGCCAAGAACCGCCGCGTGCTGTGGGGATGGATCGGCGAGACCGACT
CCGAGCGCGCCGACGTCGCCAAGGGATGGGCGTCCCTAATGTCGATCCCGAGGACGGTGG
TGCTGGACGAGAAGACCCGGACGAACCTCATCCAGTGGCCCGTCGTGGAGATCGAGACGC
TCCGCATCAACTCCACCGACCTCGGTGGTACCACCATCGACACTGGGAGCGTGTTCCCTC
TCCCGCTCCGTCGCGCCACCCAGCTCGACATTGAGGCCACCTTCCACCTCGACGCCTCAG
CTGTTGCCGCTGTCAACGAGGCTGATGTCGGCTACAACTGCAGCACCAGCGGCGGCGCCG
CCAACCGTGGCGCGCTCGGCCCCTTCGGACTCCTCGTCCTTGCCGACGGTGCCCTCCAGG
AGCAGACGGCCGTGTACTTCTACGTGTCGAGGGGCCTCGATGGAGGCCTCCAAACCCATT
TCTGCCAAGACGAGTCGCGATCGTCGCTGGCCCAGGACGTCGTGAAGCGGGTGGTCGGTT
TCACCGTGCCTGTGCTTGACGGTGAGGATCTATCCCTCAGGGTGCTGGTGGACCACTCGA
TCGTAGAGAGCTTCGCCATGGGTGGCAGGTCCACGGCAACGTCGAGGGTGTACCCGACGG
AGGCCATCTACGCCGCCGCAGGCGTGTACCTTTTCAACAACGCCACCAGCGCTGCCGTCA
CCGTCGAGAAGCTCATGGTGCATGAGATGGACGACTCCTACAACCAGATCTTCACGGCCG
AAGACGCCTCGGCCGCCTTGTAGCTGAAATTAATCAAGCTCTTGGCCCGGTAATGCATAT
TCACCTATACAACATGTTATGATTCGATCGATCACATTGATTGATCGGAAGCTTCCTCCC
TCATGGATGGATGGAGATGGAGTACTAGCTACTCTAGTCATCTTCCTGTCTGTTTGTTTG
TTTGTTGTTGTTTTTTCTTTTTTCTTTTTGGATTTTTGGGTTCTTGGTGAGATGAATTAG
GTAGATGATTTGTTGGCAGGATGATCACTGCCTTCCAAGTGTAACTACTGGCAGGATGGA
TATGTATCCTGCAGCGGGACTATGATGATGATGATGATGATGATCATATTGATCAATCAA
TTGTAAATGGAATTATTTGGGGAACGAGAGGGGCACGCGGTTGCGCTGCTACCAAATTTT
CGAAATGAAAAAAAAAAAAAAACTTTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.1	663	0.0	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi1g52210.1	613	0.0
Arabidopsis v10	AT1G62660.1	648	3e-168	Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648