barSeed - Barley Seed Development Database

Probe CUST_9716_PI390587928

Source Contig U35_375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9716_PI390587928	Hv_44K_v2	TGAGGCCTTCACCATCCGCAACATCGCCAACATGGTCCCGGCCTACTGCAAGAACAAGTA	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364013	3324	2e-24	2020 - 2079	100	60 / 60	minus	ABC00120 ABC00610 ABC00897 ABC00945 ABC18158 ABC49781
MLOC	AK248519.1	1360	2e-24	621 - 680	100	60 / 60	plus	ABC00120 ABC00610 ABC00897 ABC00945 ABC49781
MLOC	AK248545.1	1099	2e-24	353 - 412	100	60 / 60	plus	ABC00120 ABC00610 ABC00897 ABC00945 ABC49781
MLOC	MLOC_43331.3	793	2e-24	385 - 444	100	60 / 60	plus	ABC00120 ABC00610 ABC00897
MLOC	MLOC_43331.1	898	2e-24	280 - 339	100	60 / 60	plus	ABC00120 ABC00610 ABC00897 ABC00945 ABC49781
JLOC1	JLOC1_28006.2	1341	8e-25	279 - 338	100	60 / 60	plus
JLOC1	JLOC1_28006.1	1584	8e-25	522 - 581	100	60 / 60	plus
Harvest21	ABC49395	1529	3e-25	789 - 848	100	60 / 60	plus
Harvest21	ABC27059	672	3e-25	237 - 296	100	60 / 60	plus
Harvest21	ABC00907	654	3e-25	331 - 390	100	60 / 60	plus
Harvest21	ABC00905	681	3e-25	608 - 667	100	60 / 60	plus
Harvest21	ABC00897	1099	3e-25	364 - 423	100	60 / 60	plus	ABC00897
Harvest21	ABC00495	1774	3e-25	601 - 660	100	60 / 60	plus
Harvest35	U35_47883	1529	3e-25	789 - 848	100	60 / 60	plus
Harvest35	U35_376	654	3e-25	331 - 390	100	60 / 60	plus
Harvest35	U35_375	681	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_371	1119	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_194	2201	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_375 681 Hv_44K_v2
GGTCGACCGCCGCGGCTAACTGGTGCTACGCAACCGTCGCGCCCCGTGCCCGCTCCTCCA
CCATCGCCGCCAGCCTCGGCACCCCCGCGCCCTCCTCCTCCGCCTCCTTCCGCCCCAAGC
TCATCAGGACCACCCCCGTCCAGGCCGCGCCCGTCGCACCTGCATTGTAATCCGTCCGTC
CATCCATCCATCCATCCGGGGAGAGAAGAGAGAAGAGAGAAGAGAGGAGAGAAAACAAAA
GAGTAGAGTCGCGATAGTTGAAGATGAGCGGCTGCCTGTGCCTCCCCTGCTGCTATAAGA
AGTCCCCCGCCCCCGCCCCCGCTGGGGAGAACAACAAACCAGCAGCGGCAGCGGCAGCGA
TAGATTCTTCCTCCTCGTCACTCATCCAGAAGCCTACCTACCATCCACCACCTCCTCCAC
CCTCCAACAAGATGGACGCCGCCGTGGAGCGCCTCAAGACCGGGTTCGAGAAGTTCAAGA
CCGAGGTCTACGACAAGAAGCCCGATTTCTTCGAGCCGCTCAAGGCCGGCCAGGCGCCCA
AGTACATGGTGTTCGCGTGCGCCGACTCGCGTGTGTGCCCGTCGGTCACCCTGGGCCTTG
AGCCCGGTGAGGCCTTCACCATCCGCAACATCGCCAACATGGTCCCGGCCTACTGCAAGA
ACAAGTACGCCGGTGTTGGAT

Homology of Contig U35_375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g44856.1	203	6e-52
Arabidopsis v10	None