barSeed - Barley Seed Development Database

Probe CUST_9714_PI390587928

Source Contig U35_377

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9714_PI390587928	Hv_44K_v2	ACTGAGGTATCGCTCCATGTAATATATGTCATGATGGGCAAACACGGATCAAAGTTTTCC	990	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.061	2.002	1.183	0.905	0.591	0.421
Raw	96.955	158.135	76.052	91.750	21.025	16.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373933	1999	7e-23	1803 - 1862	98	59 / 60	plus	ABC00615 ABC06843
MLOC	MLOC_59102.2	4013	7e-23	2487 - 2546	98	59 / 60	minus	ABC00615 ABC06842 ABC06843
MLOC	MLOC_59102.1	3887	7e-23	2398 - 2457	98	59 / 60	minus	ABC00615 ABC06842 ABC06843
JLOC1	JLOC1_38438.1	3903	4e-23	2398 - 2457	98	59 / 60	minus
Harvest21	ABC00615	1070	1e-23	21 - 80	98	59 / 60	minus	ABC00615
Harvest35	U35_377	1053	3e-25	991 - 1050	100	60 / 60	plus
Harvest35	U35_246	930	1e-23	851 - 910	98	59 / 60	plus

Contig Sequence (1053 bp)

>U35_377 1053 Hv_44K_v2
GCCTACGGCATCCTCGCCGAGGGCGACGAGCACCCATTCGACATCGACAAGATGCTCTTC
ATGGACTGGCGCGACTCACACCTCCCCGAGGGGTCCGCGATCAAGGACCGCAACAGCCGC
GTGCCCACCTTCCTCTACGCCATGCCATTCTCGCCCACCAGGATCTTCCTCGAGGAGACG
TCGCTGGTCGCGCGCCCGGGGCTATCCATGGACGACATCCAGGAGCGCATGGCCGCGCGG
CTGAGGCACCTGGGAATTCGCATCAGGAGCGTCGAGGAGGACGAGCGCTGCGTGATCCCC
ATGGGCGGGCCGCTGCCCGTGCTGCCGCAGAGGGTGGTCGGCATCGGCGGCACGGCCGGG
ATGGTGCATCCATCCACAGGGTACATGGTGGCGCGCACACTGGCGACCGCGCCCATCGTG
GCAGACTCCATCGTGCGGTTTCTAGACACCGGAAACGGCGGCATCGCCGGGGACGCGCTC
GCCGCCCAGGTGTGGAAGGAGCTGTGGCCCACGGACAGGCGGAGGCAGAGGGAATTCTTC
TGCTTCGGCATGGACGTCCTGCTCAAGCTCGACCTCCAAGGTACACGACGCTTCTTCAAC
GCATTCTTCGACCTCGAGCCGCACTACTGGCACGGCTTCCTCTCGTCGAGGCTGTTCCTG
CCTGAGCTCCTCATGTTCGGGCTCTCGCTGTTCGCGCACGCCTCAACCACGTCCAAGCTG
GAGATCATGGCCAAGGGCACCGTGCCCCTTGCCAAGATGGTCGGCAACTTGATACAGGAC
AAGGATAGGTGATAACTTTAGAGGGTATGTACCTGCATTTCTCATCTCAAGATCTTCATG
GGGTCTTTGATTTTGGCATAGCTTTTCTCCAATGTATATCTATGATTGGCAACGAGGATT
TAAATAGCACTGCTAGCAACAGCAGCTTAGGACCTCCAGGGAGATGTAACAATTCTTGCT
GCTGCTACGTTATTGAGATGTATAGTTCATACTGAGGTATCGCTCCATGTAATATATGTC
ATGATGGGCAAACACGGATCAAAGTTTTCCCGT

Homology of Contig U35_377 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09750.1	490	2e-166	protein\|lycopene beta cyclase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g06597.1	492	5e-179
Arabidopsis v10	AT3G10230.1	501	5e-149	\| Symbols: LYC \| lycopene cyclase \| chr3:3164340-3165845 REVERSE LENGTH=501