barSeed - Barley Seed Development Database

Probe CUST_9615_PI390587928

Source Contig U35_18936

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9615_PI390587928	Hv_44K_v2	CTTCTTGTGGTATTGTTCCTTACGTTGGTAAATGACCCAAGAAACAATGCACTTATTTTT	988	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.041	1.731	1.607	1.141	0.410	0.255
Raw	31.280	87.469	66.206	77.383	9.117	6.173

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58105.3	1979	7e-23	1897 - 1957	98	60 / 61	plus	ABC09936
MLOC	MLOC_58105.2	5572	7e-23	3668 - 3728	98	60 / 61	minus	ABC00642 ABC03659 ABC09936
Harvest21	ABC09936	1061	3e-25	989 - 1048	100	60 / 60	plus	ABC09936
Harvest35	U35_18936	1061	3e-25	989 - 1048	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_18936 1061 Hv_44K_v2
TCGGTACGAGGGAACGGGGTCATTTGTGACACTGCCTGATGGAGAAGAAGGATTCCTCCC
AAGGGAAGAGGAAGCAGCGGCACTGTTTACCCTTATCGGGCATTCCGCGCTGGAAGTTGG
TCAAGAGGTAACGGTGAAAGTATTGAATGTAGCACGAGGCCAGGTCACATTGACAATGAA
GGGGGGAGAAGATGATGAAGACGAGTTGTCGTCGTTAAACACCAACCTGAAGCAGGGATG
GTCCAGAGGGACCAACGCTTTCGAGTTAGCTTTCCGTAGGAGCAAGGAAATCTCTGCATT
CTTGGACCAGAGGGAAAAGGTTACTGCTCCAGAAGTGAAAACAGAAGTTGAGACTGAGAC
TTCAGTTTCAACTTCTGGGGTTGAAAGCACAGTTGACGACAAGCTCGTTGAGTCTCCTAC
TGAAGTTGAAAGCAAAGAGGATAGCTCTTCAACAGAAGCTGTCACTGGTGCCGTTGAGCC
TCCTACAGTTTCTGCTACTGAAGTTGAAAGCAAAGAGGAGGACAGCGCTTCAACAGAAGC
TGTCACTGGCGCCGCTGAGCCTCCTACAGTTTCTGCTATTGAAGTTGAAAGCAAAGAGGA
GGGTAGCTCTTCAACAGAAGCTGCCACTGGCGCCGTTGAGGAAATCACTCCTCTTGATAA
GGCTGAGGAGCCAGAAGAATCAGTGCCGGAGGTTCCTGCAACTGCAAGTAGTGAGTCTGC
TGTGGTAACTGAGGAAGTAGCAGCCCCGGATGAGAAAACCACAGAGGTTTCTGCTACTGG
AGCTGCAGAAGCAAGCATAACCACAGGTCAGCAGTAATTTTTGTCGACCAGATCTTATCT
GCAAAAGGCCCTGATATGTAGTAATTTGATCAGTCACGTCCTGTCTGCGAAAGGCTCTTC
AAGCAACTCTACCTAATTAGGAAGAGTATTAGGATAGATTGCATGTAAACTGTTCAAGCA
ACTCCTTTTGCCAGTTCTTTTTATATTTCTTCTTGTGGTATTGTTCCTTACGTTGGTAAA
TGACCCAAGAAACAATGCACTTATTTTTTTCCTCGCTAGCT

Homology of Contig U35_18936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g05950.1	963	5e-73
Arabidopsis v10	None